GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A5WWE7_DANRE ALDH2 ENSDARG00000037094 None Not determined 12
adh8a ADH1B ENSDARG00000091211 2 Not determined 5
adh8a ADH7 ENSDARG00000091211 2 Not determined 3
adh8b ADH1B ENSDARG00000024278 1 Not determined 5
adh8b ADH7 ENSDARG00000024278 1 Not determined 3
ALDH2 (3 of 4) ALDH2 ENSDARG00000090766 None Not determined 12
aldh2a ALDH2 ENSDARG00000089924 1 Not determined 12
aldh2b ALDH2 ENSDARG00000028087 None Not determined 12
fam175a FAM175A ENSDARG00000043339 1 Not determined 1
zgc:63568 ADH1B ENSDARG00000087262 2 Not determined 5
zgc:63568 ADH7 ENSDARG00000087262 2 Not determined 3
zgc:77938 ADH1B ENSDARG00000088366 2 Not determined 5
zgc:77938 ADH7 ENSDARG00000088366 2 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • ADH
  • ADH1C
  • HEL308
* quick link - http://q.sanger.ac.uk/8hx82dnc