GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ABCB11 ABCB11 ENSDARG00000070078 2 Not determined 6
abcb11a ABCB11 ENSDARG00000011573 4 Not determined 6
apoa1 APOA5 ENSDARG00000012076 1 Not determined 22
apoa4 APOA5 ENSDARG00000040298 1 Not determined 22
cetp CETP ENSDARG00000030872 1 Not determined 27
lipc LIPC ENSDARG00000053476 2 Not determined 24
LIPC (2 of 2) LIPC ENSDARG00000090486 None Not determined 24
LOC100331214 LPL ENSDARG00000034667 None Not determined 21
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
lpl LPL ENSDARG00000087697 1 Not determined 21
LPL (1 of 2) LPL ENSDARG00000091659 None Not determined 21
si:ch211-245h14.2 ZNF512 ENSDARG00000041910 4 Not determined 2
si:dkey-7f3.15 APOA5 ENSDARG00000094929 None Not determined 22
si:dkeyp-69c1.6 BUD13 ENSDARG00000006666 2 Not determined 8
tfap2b TFAP2B ENSDARG00000012667 1 Not determined 5
trib1 TRIB1 ENSDARG00000076142 1 Not determined 12
zgc:112992 APOA5 ENSDARG00000086281 None Not determined 22
zgc:194131 APOA5 ENSDARG00000020866 2 Not determined 22
znf259 ZNF259 ENSDARG00000043542 1 Not determined 11

The following reported genes could not be linked automatically to a zebrafish gene:

  • C2orf16
  • CCDC121
  • LOC100128354
  • LOC100128354
  • LOC100128354
  • LOC100129150
  • LOC100129150
  • LOC100129500
* quick link - http://q.sanger.ac.uk/lipkvekc