GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A5PMT7_DANRE LAMC2 ENSDARG00000068288 1 Not determined 2
abca1a ABCA1 ENSDARG00000074635 9 Not determined 13
apoa1 APOA5 ENSDARG00000012076 1 Not determined 22
apoa4 APOA5 ENSDARG00000040298 1 Not determined 22
celsr1a CELSR2 ENSDARG00000069185 3 Not determined 17
CELSR2 CELSR2 ENSDARG00000088231 3 Not determined 17
celsr2l CELSR2 ENSDARG00000019726 1 Not determined 17
cetp CETP ENSDARG00000030872 1 Not determined 27
CSMD1 CSMD1 ENSDARG00000058353 1 Not determined 12
dnm2 DNM2 ENSDARG00000069937 10 Not determined 1
DNM2 (2 of 2) DNM2 ENSDARG00000020270 2 Not determined 1
DOCK6 DOCK6 ENSDARG00000035706 4 Normal 2
dtnb DTNB ENSDARG00000013020 2 Not determined 3
dtng DTNB ENSDARG00000077694 None Not determined 3
edc4 EDC4 ENSDARG00000062266 2 Not determined 2
grinl1a GCOM1 ENSDARG00000075017 1 Not determined 1
IGSF5 (2 of 2) IGSF5 ENSDARG00000090953 1 Not determined 1
KLHL29 (1 of 2) KLHL29 ENSDARG00000087688 2 Not determined 3
LOC100334314 KLHL29 ENSDARG00000043799 1 Not determined 3
LOC100334463 PLEKHO2 ENSDARG00000016774 None Not determined 1
LOC793137 LCAT ENSDARG00000062375 None Not determined 6
NP_956003.1 DTNB ENSDARG00000037388 None Not determined 3
oprm1 OPRM1 ENSDARG00000039434 1 Not determined 1
PDGFD PDGFD ENSDARG00000077677 2 Not determined 3
ppp1r3b PPP1R3B ENSDARG00000044691 None Not determined 9
si:ch211-231m12.2 IGSF5 ENSDARG00000087983 None Not determined 1
si:ch73-386h18.1 ZFHX3 ENSDARG00000073944 3 Not determined 7
si:dkey-242g16.2 PPP1R3B ENSDARG00000069377 None Not determined 9
si:dkey-30k22.7 CELSR2 ENSDARG00000037286 3 Not determined 17
si:dkey-7f3.15 APOA5 ENSDARG00000094929 None Not determined 22
slc12a9 SLC12A9 ENSDARG00000060366 2 Not determined 3
slc30a1 SLC30A1 ENSDARG00000005463 2 2 normal 1
smarca4 SMARCA4 ENSDARG00000077226 2 Not determined 1
SMARCA4 (2 of 2) SMARCA4 ENSDARG00000008350 2 Not determined 1
tcf7l2 TCF7L2 ENSDARG00000004415 4 Not determined 23
tnika TNIK ENSDARG00000056218 2 Not determined 2
tnikb TNIK ENSDARG00000009031 1 Not determined 2
ZFHX3 ZFHX3 ENSDARG00000073681 7 Not determined 7
zgc:112992 APOA5 ENSDARG00000086281 None Not determined 22
zgc:113271 RNF130 ENSDARG00000022389 1 Not determined 1
zgc:153039 SLC12A9 ENSDARG00000060524 None Not determined 3
zgc:162909 SLC30A1 ENSDARG00000053896 1 Not determined 1
zgc:171581 ABCA1 ENSDARG00000079009 5 Not determined 13
zgc:194131 APOA5 ENSDARG00000020866 2 Not determined 22
zgc:77112 PPP1R3B ENSDARG00000015657 None Not determined 9
* quick link - http://q.sanger.ac.uk/g6cpho7u