GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
anks1b ANKS1B ENSDARG00000003512 5 Not determined 7
atg4c ATG4C ENSDARG00000044373 1 Not determined 2
fstl5 FSTL5 ENSDARG00000040198 8 Normal 1
IL1RAP IL1RAP ENSDARG00000091088 2 Not determined 2
kcne4 KCNE4 ENSDARG00000068257 None Not determined 2
klhl36 KLHL36 ENSDARG00000030251 3 Not determined 1
lta4h LTA4H ENSDARG00000006029 None Not determined 1
pbx1a PBX1 ENSDARG00000089610 4 Not determined 2
pcdh15a PCDH15 ENSDARG00000052232 8 Normal 3
pcdh15b PCDH15 ENSDARG00000008127 4 Not determined 3
pigf PIGF ENSDARG00000032780 2 Not determined 1
ppm1h PPM1H ENSDARG00000063684 None Not determined 2
rad23b RAD23B ENSDARG00000021550 1 Not determined 3
sept9a SEPT9 ENSDARG00000020235 2 Not determined 2
sept9b SEPT9 ENSDARG00000041718 3 Not determined 2
si:ch1073-376g14.1 ZNF804B ENSDARG00000086290 2 Not determined 4
si:ch211-103i6.5 FASTKD2 ENSDARG00000074031 3 Not determined 2
si:ch211-213b8.4 PCDH15 ENSDARG00000095360 None Not determined 3
sqrdl SQRDL ENSDARG00000017034 1 Not determined 2
zgc:101872 ANAPC4 ENSDARG00000032237 2 Normal 1
zgc:123349 RAD23B ENSDARG00000058984 None Not determined 3
zgc:158824 PBX1 ENSDARG00000089550 1 Not determined 2
zgc:171223 CCDC99 ENSDARG00000078054 None Not determined 1
zgc:63986 CYP20A1 ENSDARG00000006040 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C12orf55
  • CRIPT
  • RPL13AP17
* quick link - http://q.sanger.ac.uk/91iee028