GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apob APOB ENSDARG00000042780 11 Not determined 17
apobl APOB ENSDARG00000022767 11 Not determined 17
chmp5 CHMP5 ENSDARG00000041900 None Not determined 1
cmklr1 CMKLR1 ENSDARG00000090890 3 Not determined 3
CNNM3 CNNM3 ENSDARG00000074853 1 Not determined 1
ddx43 DDX53 ENSDARG00000022614 2 Not determined 1
FAM82A1 FAM82A1 ENSDARG00000078761 3 Not determined 1
fshr FSHR ENSDARG00000071494 2 Not determined 4
ggt1 GGTLC1 ENSDARG00000023526 None Not determined 1
gli2a GLI2 ENSDARG00000025641 9 Not determined 3
gli2b GLI2 ENSDARG00000020884 6 Not determined 3
igsf21a IGSF21 ENSDARG00000031049 5 Not determined 2
igsf21b IGSF21 ENSDARG00000056084 1 Not determined 2
LOC569014 GGTLC1 ENSDARG00000018342 1 Not determined 1
LOC794105 GGTLC1 ENSDARG00000087063 None Not determined 1
PTGFRN (2 of 2) PTGFRN ENSDARG00000075505 2 Not determined 1
PTGFRN (1 of 2) PTGFRN ENSDARG00000078172 1 Not determined 1
si:ch211-181p13.1 LRP1B ENSDARG00000004789 25 Normal 5
si:ch211-240b21.4 CMKLR1 ENSDARG00000093228 None Not determined 3
si:ch211-240b21.5 CMKLR1 ENSDARG00000092087 None Not determined 3
si:ch211-93n23.6 TTC7A ENSDARG00000074760 4 Normal 2
si:dkey-184d2.1 LRP1B ENSDARG00000061517 7 Not determined 5
si:dkey-216e9.3 CHMP5 ENSDARG00000038855 4 Not determined 1
si:dkey-222h21.12 GGTLC1 ENSDARG00000092350 None Not determined 1
si:dkey-222h21.13 GGTLC1 ENSDARG00000087054 1 Not determined 1
si:dkey-222h21.14 GGTLC1 ENSDARG00000075055 2 Not determined 1
si:dkeyp-106c3.3 APOB ENSDARG00000093159 None Not determined 17
si:dkeyp-122a9.3 LRP1B ENSDARG00000094171 10 Normal 5
si:dkeyp-88f5.1 APOB ENSDARG00000075016 5 Not determined 17
sytl5 SYTL5 ENSDARG00000062135 1 Not determined 1
tmem178 TMEM178 ENSDARG00000020758 4 Normal 2
zgc:123170 TSN ENSDARG00000041830 1 Not determined 1
zgc:162939 C9orf3 ENSDARG00000068461 2 Not determined 4
zgc:91849 PTGFRN ENSDARG00000014323 3 Not determined 1
ZNF608 ZNF608 ENSDARG00000075823 4 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • ELA2A
  • HEPH
  • KIAA1166
  • MAGEB18
  • WDR42B
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