GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apob APOB ENSDARG00000042780 7 Not determined 17
apobl APOB ENSDARG00000022767 6 Not determined 17
chmp5 CHMP5 ENSDARG00000041900 None Not determined 1
cmklr1 CMKLR1 ENSDARG00000090890 1 Not determined 3
CNNM3 CNNM3 ENSDARG00000074853 1 Not determined 1
ddx43 DDX53 ENSDARG00000022614 1 Not determined 1
FAM82A1 FAM82A1 ENSDARG00000078761 3 Not determined 1
fshr FSHR ENSDARG00000071494 1 Not determined 4
ggt1 GGTLC1 ENSDARG00000023526 None Not determined 1
gli2a GLI2 ENSDARG00000025641 8 Not determined 3
gli2b GLI2 ENSDARG00000020884 3 Not determined 3
igsf21a IGSF21 ENSDARG00000031049 2 Not determined 2
igsf21b IGSF21 ENSDARG00000056084 1 Not determined 2
LOC569014 GGTLC1 ENSDARG00000018342 1 Not determined 1
LOC794105 GGTLC1 ENSDARG00000087063 None Not determined 1
PTGFRN (2 of 2) PTGFRN ENSDARG00000075505 None Not determined 1
PTGFRN (1 of 2) PTGFRN ENSDARG00000078172 None Not determined 1
si:ch211-181p13.1 LRP1B ENSDARG00000004789 20 Normal 5
si:ch211-240b21.4 CMKLR1 ENSDARG00000093228 None Not determined 3
si:ch211-240b21.5 CMKLR1 ENSDARG00000092087 None Not determined 3
si:ch211-93n23.6 TTC7A ENSDARG00000074760 2 Normal 2
si:dkey-184d2.1 LRP1B ENSDARG00000061517 5 Not determined 5
si:dkey-216e9.3 CHMP5 ENSDARG00000038855 2 Not determined 1
si:dkey-222h21.12 GGTLC1 ENSDARG00000092350 None Not determined 1
si:dkey-222h21.13 GGTLC1 ENSDARG00000087054 1 Not determined 1
si:dkey-222h21.14 GGTLC1 ENSDARG00000075055 None Not determined 1
si:dkeyp-106c3.3 APOB ENSDARG00000093159 None Not determined 17
si:dkeyp-122a9.3 LRP1B ENSDARG00000094171 9 Normal 5
si:dkeyp-88f5.1 APOB ENSDARG00000075016 3 Not determined 17
sytl5 SYTL5 ENSDARG00000062135 1 Not determined 1
tmem178 TMEM178 ENSDARG00000020758 2 Normal 2
zgc:123170 TSN ENSDARG00000041830 1 Not determined 1
zgc:162939 C9orf3 ENSDARG00000068461 1 Not determined 4
zgc:91849 PTGFRN ENSDARG00000014323 2 Not determined 1
ZNF608 ZNF608 ENSDARG00000075823 2 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • ELA2A
  • HEPH
  • KIAA1166
  • MAGEB18
  • WDR42B
* quick link - http://q.sanger.ac.uk/jtlkcn2q