GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ASTN2 (3 of 3) ASTN2 ENSDARG00000090831 None Not determined 9
ASTN2 (2 of 3) ASTN2 ENSDARG00000086640 None Not determined 9
ASTN2 (1 of 3) ASTN2 ENSDARG00000089410 1 Not determined 9
D3HU68_DANRE PTPRU ENSDARG00000059949 2 Not determined 3
fam69a FAM69A ENSDARG00000062955 3 Not determined 1
gabrr1 GABRR1 ENSDARG00000043902 None Not determined 1
LOC100330554 GABRR1 ENSDARG00000013047 None Not determined 1
LOC565615 RIN2 ENSDARG00000077040 2 Not determined 2
LOC797682 FAM69A ENSDARG00000061362 None Not determined 1
nalcn NALCN ENSDARG00000001835 6 Not determined 3
PTPRU_DANRE PTPRU ENSDARG00000078090 1 Not determined 3
rin2 RIN2 ENSDARG00000074589 1 Not determined 2
si:ch211-273a21.1 CNTN5 ENSDARG00000013647 2 2 normal 6
si:dkey-153p21.2 PTPRU ENSDARG00000092638 None Not determined 3
zgc:114139 FAM110B ENSDARG00000088073 1 Not determined 1
zgc:55318 CNTN5 ENSDARG00000021584 4 Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • CNTNAP2
  • CYCSP44
  • DAOA
  • LOC393076
  • NAP5
  • TMEM212
* quick link - http://q.sanger.ac.uk/fzhddkh2