GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoa1 APOA5 ENSDARG00000012076 1 Not determined 22
apoa4 APOA5 ENSDARG00000040298 1 Not determined 22
apoeb APOE ENSDARG00000040295 None Not determined 42
cadm1a CADM1 ENSDARG00000031075 1 Not determined 2
cadm1b CADM1 ENSDARG00000042677 1 Not determined 2
cetp CETP ENSDARG00000030872 1 Not determined 27
herpud1 HERPUD1 ENSDARG00000024314 1 Not determined 3
il1rapl1a IL1RAPL1 ENSDARG00000062045 6 Not determined 1
il1rapl1b IL1RAPL1 ENSDARG00000078740 1 Not determined 1
LOC100001408 APCDD1L ENSDARG00000075557 1 Not determined 1
si:dkey-7f3.15 APOA5 ENSDARG00000094929 None Not determined 22
si:dkeyp-69c1.6 BUD13 ENSDARG00000006666 2 Not determined 8
SORL1 SORL1 ENSDARG00000013892 7 Normal 2
stx16 STX16 ENSDARG00000003307 2 Not determined 1
zgc:110064 APOE ENSDARG00000086370 None Not determined 42
zgc:112992 APOA5 ENSDARG00000086281 None Not determined 22
zgc:194131 APOA5 ENSDARG00000020866 2 Not determined 22

The following reported genes could not be linked automatically to a zebrafish gene:

  • BLID
* quick link - http://q.sanger.ac.uk/iv3ddr25