GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Joint influence of small-effect genetic variants on human longevity.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A3KNM8_DANRE NTHL1 ENSDARG00000042881 None Not determined 1
abcc4 ABCC4 ENSDARG00000058953 2 Not determined 4
akr1b1 AKR1B15 ENSDARG00000006215 1 Not determined 1
C14orf102 C14orf102 ENSDARG00000074726 2 Not determined 1
cars CARS ENSDARG00000036164 3 1 phenotype 1
cdh5 CDH4 ENSDARG00000075549 5 Not determined 6
dachc DACH1 ENSDARG00000003142 1 Not determined 5
foxg1a FOXG1 ENSDARG00000070769 2 Not determined 2
foxg1b FOXG1 ENSDARG00000032705 1 Normal 2
foxg1c FOXG1 ENSDARG00000068380 None Not determined 2
foxq2 FOXG1 ENSDARG00000071394 None Not determined 2
GABRB3 GABRB3 ENSDARG00000023771 1 Not determined 2
gpr133 GPR133 ENSDARG00000053344 1 Not determined 4
hnf1a HNF1A ENSDARG00000009470 None Not determined 21
LOC100007362 PCDH20 ENSDARG00000036424 None Not determined 4
LOC567594 C7orf50 ENSDARG00000045254 1 Not determined 1
mad1l1 MAD1L1 ENSDARG00000033852 3 Not determined 3
ncam2 NCAM2 ENSDARG00000017466 5 Not determined 3
NP_571161.1 CDH4 ENSDARG00000015002 2 Not determined 6
nrxn1a NRXN1 ENSDARG00000061647 3 Normal 4
nrxn1b NRXN1 ENSDARG00000063635 2 Not determined 4
rac2 RAC2 ENSDARG00000038010 None Not determined 1
sdad1 SDAD1 ENSDARG00000068903 2 Not determined 1
si:ch211-130h14.2 PRR18 ENSDARG00000093768 None Not determined 1
si:dkey-180p18.9 AKR1B15 ENSDARG00000045598 1 Not determined 1
si:dkey-201c13.4 TRPM3 ENSDARG00000039181 5 Not determined 2
si:dkey-27i16.3 PCDH20 ENSDARG00000057773 5 Not determined 4
si:dkey-87m23.1 COL5A1 ENSDARG00000012593 3 Not determined 5
slc38a10 SLC38A10 ENSDARG00000077081 1 Not determined 2
stk24a STK24 ENSDARG00000031413 1 Not determined 2
stk24b STK24 ENSDARG00000023878 1 Not determined 2
SVEP1 SVEP1 ENSDARG00000013526 6 Not determined 2
tbc1d22a TBC1D22A ENSDARG00000045510 1 Not determined 2
tgfa TGFA ENSDARG00000053939 None Not determined 3
zgc:152904 NCAM2 ENSDARG00000055669 1 Not determined 3
zgc:158869 DACH1 ENSDARG00000069440 3 Not determined 5
zgc:175247 FOXG1 ENSDARG00000070053 None Not determined 2
zgc:56622 AKR1B15 ENSDARG00000031014 1 Not determined 1
znf516 ZNF516 ENSDARG00000070809 3 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC000050.2
  • AC011747.3
  • AC016582.2
  • AC117500.2
  • AL109920.3
  • AL365229.1
  • RP11-1244E8.1
  • RP11-138I17.1
  • RP11-24C3.2
  • RP11-388D4.1
  • RP11-433J20.2
  • TCF1
  • WDR72
* quick link - http://q.sanger.ac.uk/s4yvjvr6