GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
akr1b1 AKR1E2 ENSDARG00000006215 1 Not determined 1
erg ERG ENSDARG00000077304 1 Not determined 3
LOC794555 NFKBIL1 ENSDARG00000003157 1 Not determined 2
si:dkey-180p18.9 AKR1E2 ENSDARG00000045598 1 Not determined 1
si:dkeyp-2c8.2 TMTC2 ENSDARG00000035273 1 Not determined 3
tmtc2 TMTC2 ENSDARG00000045753 2 Not determined 3
tnfa LTA ENSDARG00000009511 2 Not determined 2
tnfa TNF ENSDARG00000009511 2 Not determined 3
tnfb LTA ENSDARG00000013598 2 Not determined 2
tnfb TNF ENSDARG00000013598 2 Not determined 3
zgc:56622 AKR1E2 ENSDARG00000031014 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • AIF1
  • LOC338588
  • LTB
  • NCRNA00114
* quick link - http://q.sanger.ac.uk/8v957id0