GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of optic disc parameters.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atoh1b ATOH7 ENSDARG00000033400 1 Not determined 3
atoh1c ATOH7 ENSDARG00000039602 None Not determined 3
atoh7 ATOH7 ENSDARG00000069552 1 Not determined 3
bcas3 BCAS3 ENSDARG00000054893 2 Normal 8
bcas3 BCAS3 ENSDARG00000090764 None Not determined 8
cdc7 CDC7 ENSDARG00000023584 None Not determined 2
cdkn2b CDKN2B ENSDARG00000037262 None Not determined 30
chek2 CHEK2 ENSDARG00000025820 1 Not determined 4
dclk1 DCLK1 ENSDARG00000018856 1 Not determined 4
LOC100329924 SCYL1 ENSDARG00000009017 None Not determined 2
LOC562799 ARID3A ENSDARG00000070843 1 Not determined 1
rerea RERE ENSDARG00000077353 7 Not determined 4
rereb RERE ENSDARG00000075670 4 Not determined 4
sall1a SALL1 ENSDARG00000074319 1 Not determined 3
sall1b SALL1 ENSDARG00000075891 1 Not determined 3
six1a SIX1 ENSDARG00000039304 1 Not determined 4
six1b SIX1 ENSDARG00000026473 1 Not determined 4
six9 SIX1 ENSDARG00000068407 None Not determined 4
TGFBR3 TGFBR3 ENSDARG00000078670 1 Not determined 4
wu:fk36e11 SCYL1 ENSDARG00000079854 None Not determined 2
zgc:112210 PBLD ENSDARG00000016704 None Not determined 2
zgc:113291 PBLD ENSDARG00000026359 2 Not determined 2
zgc:171845 DCLK1 ENSDARG00000074976 None Not determined 4
* quick link - http://q.sanger.ac.uk/cpcublko