GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies five new breast cancer susceptibility loci.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ankrd16 ANKRD16 ENSDARG00000003822 1 Not determined 2
B0S5R9_DANRE FGF3 ENSDARG00000087715 None Not determined 2
ccnd1 CCND1 ENSDARG00000035750 3 Not determined 2
cdkn2b CDKN2A ENSDARG00000037262 2 Not determined 25
cdkn2b CDKN2B ENSDARG00000037262 2 Not determined 30
esr1 ESR1 ENSDARG00000004111 1 Not determined 14
fgf19 FGF19 ENSDARG00000074833 None Not determined 1
fgf3 FGF3 ENSDARG00000068094 None Not determined 2
fgfr2 FGFR2 ENSDARG00000058115 7 Not determined 10
im:7162084 CCND1 ENSDARG00000019741 1 Not determined 2
LOC100332780 ZMIZ1 ENSDARG00000076477 3 Not determined 10
LOC799320 ZNF365 ENSDARG00000087985 1 Not determined 11
oraov1 ORAOV1 ENSDARG00000074700 None Not determined 1
si:dkey-117i6.1 TOX3 ENSDARG00000073957 3 Not determined 8
si:dkey-22l11.2 FBXO18 ENSDARG00000062983 3 Not determined 1
si:dkey-281i8.3 FGF3 ENSDARG00000078625 None Not determined 2
si:rp71-80a19.2 MAP3K1 ENSDARG00000088180 None Not determined 5
SLC4A7 SLC4A7 ENSDARG00000073952 4 Not determined 4
zgc:103502 CCND1 ENSDARG00000027391 None Not determined 2
zgc:158867 C6orf97 ENSDARG00000016161 1 Not determined 8
zmiz1 ZMIZ1 ENSDARG00000074502 10 Not determined 10

The following reported genes could not be linked automatically to a zebrafish gene:

  • FGF4
  • LSP1
  • MYEOV
Short-link