GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common genetic variation and performance on standardized cognitive tests.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acss1 ACSS1 ENSDARG00000044142 None Not determined 1
atl1 ATL1 ENSDARG00000060481 3 Not determined 1
bach2 BACH2 ENSDARG00000004074 4 Not determined 14
cdkl1 CDKL1 ENSDARG00000017329 None Not determined 1
cx28.1 GJA5 ENSDARG00000041792 None Not determined 1
cx28.9 GJA5 ENSDARG00000041797 None Not determined 1
cx32.2 GJA5 ENSDARG00000076789 3 Not determined 1
cx32.3 GJA5 ENSDARG00000041787 None Not determined 1
cx34.5 GJA5 ENSDARG00000069411 1 Not determined 1
cx41.8 GJA5 ENSDARG00000069450 2 Not determined 1
cx45.6 GJA5 ENSDARG00000040065 1 Not determined 1
grik4 GRIK4 ENSDARG00000026753 9 Not determined 1
gtf2e2 GTF2E2 ENSDARG00000012672 1 Not determined 1
ids IDS ENSDARG00000071699 None Not determined 1
kcnb2 KCNB2 ENSDARG00000038862 1 Not determined 4
lipc LIPC ENSDARG00000053476 2 Not determined 24
LIPC (2 of 2) LIPC ENSDARG00000090486 None Not determined 24
LOC100000804 RIMS1 ENSDARG00000089412 1 Not determined 1
LOC100003594 FAM135B ENSDARG00000079899 1 Not determined 2
LOC100331644 TBC1D30 ENSDARG00000075281 None Not determined 1
LOC100334300 PHLDB2 ENSDARG00000089739 None Not determined 1
LOC100335008 GRAMD3 ENSDARG00000088075 None Not determined 2
LOC557210 BACH2 ENSDARG00000036569 3 Not determined 14
LOC567369 AFAP1L2 ENSDARG00000074806 None Not determined 1
LOC568486 RIMS1 ENSDARG00000013690 None Not determined 1
map4k5 MAP4K5 ENSDARG00000039125 None Not determined 1
MCTP2 (1 of 2) MCTP2 ENSDARG00000073970 1 Not determined 5
ncalda NCALD ENSDARG00000070688 None Not determined 2
ncaldb NCALD ENSDARG00000011334 None Not determined 2
nek6 NEK6 ENSDARG00000037963 None Not determined 1
nek7 NEK6 ENSDARG00000056966 2 Not determined 1
parp12b PARP11 ENSDARG00000057974 None Not determined 2
pknox1.1 PKNOX1 ENSDARG00000078080 1 Not determined 3
pknox1.2 PKNOX1 ENSDARG00000036542 1 Not determined 3
PLCB1 (2 of 2) PLCB1 ENSDARG00000068594 1 Not determined 4
PLCB1 (1 of 2) PLCB1 ENSDARG00000090084 None Not determined 4
Q90VY7_DANRE PKNOX1 ENSDARG00000018765 None Not determined 3
ripk2 RIPK2 ENSDARG00000033713 None Not determined 3
si:ch211-207d6.2 KIAA1217 ENSDARG00000031658 3 Not determined 1
si:ch211-214d15.1 MCTP2 ENSDARG00000001414 3 Not determined 5
si:ch211-244c8.3 PHLDB2 ENSDARG00000079889 2 Not determined 1
si:ch211-282c13.6 NIN ENSDARG00000060298 2 Not determined 1
si:ch211-285f17.1 KIAA1217 ENSDARG00000059333 3 Not determined 1
si:dkey-11p10.8 PHLDB2 ENSDARG00000074843 1 Not determined 1
si:dkey-11p10.9 PLCXD2 ENSDARG00000058200 1 Not determined 1
si:dkey-14m15.1 RIMS1 ENSDARG00000074680 3 Not determined 1
si:dkey-179o14.1 RIMS1 ENSDARG00000078902 2 Not determined 1
si:dkey-192j17.1 KCNB2 ENSDARG00000088842 1 Not determined 4
si:dkey-220o5.5 AFAP1L2 ENSDARG00000077212 None Not determined 1
si:dkey-233p4.1 C6orf170 ENSDARG00000041734 2 Not determined 1
si:dkey-96n2.1 KIAA1217 ENSDARG00000092172 None Not determined 1
tal2 TAL2 ENSDARG00000042041 None Not determined 3
tnfaip8l3 TNFAIP8L3 ENSDARG00000088709 None Not determined 1
wu:fi13g07 GRAMD3 ENSDARG00000091387 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC007056.4-3
  • AC009063.8
  • AC009063.8
  • AC010149.4
  • AC018897.4
  • AC025187.6
  • AC062028.1
  • AC067942.6-1
  • AC079779.6
  • AC092594.1
  • AC093909.2
  • AC093909.2
  • AC093909.2
  • AC093909.2
  • AC105245.4
  • AC106873.3
  • AC131213.4
  • AC138982.2
  • AL358335.4
  • C8orf12
  • CTC-359D24.2
  • RNU6-1
  • RNU6-2
  • RP11-109P14.2
  • RP11-264E18.1
  • RP11-538A16.1
  • RP11-600P1.2
  • RP13-140E4.1
  • RP5-965F6.2
  • RP5-995J12.2
  • SPG3A
  • XXbac-BPG250I8.13
* quick link - http://q.sanger.ac.uk/8u7qaq8v