GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of biochemical traits in Korcula Island, Croatia.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cetp CETP ENSDARG00000030872 1 Not determined 27
GRIK2 (2 of 2) GRIK2 ENSDARG00000091173 None Not determined 5
GRIK2 (1 of 2) GRIK2 ENSDARG00000074515 None Not determined 5
LOC100334870 RAP1GDS1 ENSDARG00000073741 None Not determined 1
NP_001107902.1 SLC2A9 ENSDARG00000063288 3 1 phenotype 14
nr3c2 NR3C2 ENSDARG00000037025 1 Not determined 5
pcsk2 PCSK2 ENSDARG00000019451 None Not determined 4
pknox1.1 PKNOX1 ENSDARG00000078080 1 Not determined 3
pknox1.2 PKNOX1 ENSDARG00000036542 1 Not determined 3
Q90VY7_DANRE PKNOX1 ENSDARG00000018765 None Not determined 3
si:ch211-209p5.2 LPHN3 ENSDARG00000061121 6 Not determined 3
si:ch211-240j18.3 KSR2 ENSDARG00000094526 None Not determined 3
si:dkey-191g9.5 RAP1GDS1 ENSDARG00000056080 2 Not determined 1
slc14a2 SLC14A2 ENSDARG00000051914 2 Not determined 4
slc2a11b SLC2A9 ENSDARG00000093395 2 1 phenotype 14
slc2a15a SLC2A9 ENSDARG00000029894 None Not determined 14
slc2a15b SLC2A9 ENSDARG00000053269 1 Not determined 14
usp46 USP46 ENSDARG00000045343 2 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • Neuroligin 4
  • ZCCHC16
* quick link - http://q.sanger.ac.uk/vvqjlere