GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ABCB11 ABCB11 ENSDARG00000070078 2 Not determined 6
abcb11a ABCB11 ENSDARG00000011573 4 Not determined 6
apob APOB ENSDARG00000042780 7 Not determined 17
apobl APOB ENSDARG00000022767 6 Not determined 17
ar AR ENSDARG00000067976 2 Not determined 5
celsr1a CELSR2 ENSDARG00000069185 3 Not determined 17
CELSR2 CELSR2 ENSDARG00000088231 3 Not determined 17
celsr2l CELSR2 ENSDARG00000019726 1 Not determined 17
cetp CETP ENSDARG00000030872 1 Not determined 27
fads2 FADS2 ENSDARG00000019532 None Not determined 15
ldlr LDLR ENSDARG00000029476 1 Not determined 15
LDLR (2 of 2) LDLR ENSDARG00000089730 None Not determined 15
lef1 LEF1 ENSDARG00000031894 2 Not determined 3
lepr LEPR ENSDARG00000070961 4 Not determined 6
lipc LIPC ENSDARG00000053476 2 Not determined 24
LIPC (2 of 2) LIPC ENSDARG00000090486 None Not determined 24
LOC100331214 LPL ENSDARG00000034667 None Not determined 21
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
LOC793137 LCAT ENSDARG00000062375 None Not determined 6
lpl LPL ENSDARG00000087697 1 Not determined 21
LPL (1 of 2) LPL ENSDARG00000091659 None Not determined 21
MR1BB_DANRE MTNR1B ENSDARG00000086493 None Not determined 15
mtnr1ba MTNR1B ENSDARG00000053833 None Not determined 15
mtnr1bb MTNR1B ENSDARG00000086883 None Not determined 15
nr1h3 NR1H3 ENSDARG00000043170 None Not determined 3
pank1a PANK1 ENSDARG00000008192 1 Not determined 1
pank1b PANK1 ENSDARG00000010098 None Not determined 1
si:ch211-234p6.10 CRP ENSDARG00000056498 None Not determined 13
si:ch211-234p6.12 CRP ENSDARG00000042613 None Not determined 13
si:ch211-234p6.13 CRP ENSDARG00000056462 None Not determined 13
si:ch211-234p6.14 CRP ENSDARG00000071454 2 Not determined 13
si:ch211-234p6.7 CRP ENSDARG00000071456 None Not determined 13
si:ch211-234p6.8 CRP ENSDARG00000071457 None Not determined 13
si:ch211-234p6.9 CRP ENSDARG00000095730 None Not determined 13
si:ch211-270n8.1 CRP ENSDARG00000045089 None Not determined 13
si:dkey-159a18.1 SORT1 ENSDARG00000056145 1 Not determined 13
si:dkey-258f14.3 LDLR ENSDARG00000075974 None Not determined 15
si:dkey-30k22.7 CELSR2 ENSDARG00000037286 3 Not determined 17
si:dkey-78k11.2 CR1L ENSDARG00000095512 None Not determined 2
si:dkeyp-106c3.3 APOB ENSDARG00000093159 None Not determined 17
si:dkeyp-88f5.1 APOB ENSDARG00000075016 3 Not determined 17
sort1a SORT1 ENSDARG00000029402 None Not determined 13
sort1b SORT1 ENSDARG00000056252 7 Not determined 13
zgc:101049 CRP ENSDARG00000071051 None Not determined 13
zgc:110775 CR1L ENSDARG00000056075 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • APO cluster
  • FADS1
  • G6PC2
  • PSRC1
* quick link - http://q.sanger.ac.uk/euf1lcdn