GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study identifies protein quantitative trait loci (pQTLs).

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
angptl6 ANGPTL6 ENSDARG00000020265 None Not determined 2
atp2a2a ATP2A2 ENSDARG00000029439 1 Not determined 1
atp2a2b ATP2A2 ENSDARG00000005122 1 Not determined 1
B0S5R9_DANRE FGF3 ENSDARG00000087715 None Not determined 2
C17orf62 (2 of 2) C17orf62 ENSDARG00000091228 None Not determined 1
cacnb2a CACNB2 ENSDARG00000079906 None Not determined 8
cacnb2b CACNB2 ENSDARG00000055565 2 Not determined 8
chd1l CHD1L ENSDARG00000015471 4 Not determined 1
cntn1b CNTN1 ENSDARG00000045685 1 Not determined 1
col11a1a COL11A1 ENSDARG00000026165 5 Not determined 3
col11a1b COL11A1 ENSDARG00000009014 7 Not determined 3
ctnna2 CTNNA2 ENSDARG00000024785 4 Not determined 3
cx28.1 GJA1 ENSDARG00000041792 None Not determined 3
cx28.9 GJA1 ENSDARG00000041797 None Not determined 3
cx32.2 GJA1 ENSDARG00000076789 3 Not determined 3
cx32.3 GJA1 ENSDARG00000041787 None Not determined 3
cx34.5 GJA1 ENSDARG00000069411 1 Not determined 3
cx43 GJA1 ENSDARG00000041799 None Not determined 3
dlg2 DLG2 ENSDARG00000076691 2 Not determined 5
DOCK2 DOCK2 ENSDARG00000076562 6 Not determined 1
dsc2l DSC3 ENSDARG00000039677 2 Not determined 2
dut DUT ENSDARG00000086768 None Not determined 1
dysf DYSF ENSDARG00000007370 8 Not determined 1
epc2 EPC2 ENSDARG00000007485 1 Not determined 2
eya4 EYA4 ENSDARG00000012397 1 Not determined 3
fam49ba FAM49B ENSDARG00000020929 1 Not determined 1
fam49bb FAM49B ENSDARG00000045417 1 Not determined 1
fgf3 FGF3 ENSDARG00000068094 None Not determined 2
fzd8a FZD8 ENSDARG00000045444 2 Not determined 3
fzd8b FZD8 ENSDARG00000038569 2 Not determined 3
gadd45g GADD45G ENSDARG00000019417 None Not determined 1
gdap1 GDAP1 ENSDARG00000058601 2 Not determined 2
gdap1l1 GDAP1 ENSDARG00000028628 1 Not determined 2
ggt1 GGT1 ENSDARG00000023526 None Not determined 4
gpr133 GPR133 ENSDARG00000053344 1 Not determined 4
hs3st3b1a HS3ST3B1 ENSDARG00000059594 None Not determined 2
hs3st3b1b HS3ST3B1 ENSDARG00000086645 None Not determined 2
hs3st3l HS3ST3B1 ENSDARG00000059903 None Not determined 2
il6r IL6R ENSDARG00000070398 None Not determined 7
kcnq1 KCNQ1 ENSDARG00000059798 1 Not determined 15
KCNQ1 KCNQ1 ENSDARG00000091599 None Not determined 15
khdrbs2 KHDRBS2 ENSDARG00000069469 1 Not determined 1
KIRREL3 (2 of 3) KIRREL3 ENSDARG00000086919 None Not determined 4
kirrel3a KIRREL3 ENSDARG00000075806 1 Not determined 4
kirrel3l KIRREL3 ENSDARG00000019473 None Not determined 4
LOC100007474 ANGPTL6 ENSDARG00000089667 None Not determined 2
LOC100007488 ANGPTL6 ENSDARG00000090557 None Not determined 2
LOC100148227 ANGPTL6 ENSDARG00000095746 None Not determined 2
LOC100329339 HS3ST3B1 ENSDARG00000060253 None Not determined 2
LOC100330399 DIRAS2 ENSDARG00000086902 None Not determined 2
LOC100331149 OSBPL1A ENSDARG00000053746 None Not determined 2
LOC565314 CDAN1 ENSDARG00000042261 3 1 phenotype 1
LOC565638 GJA1 ENSDARG00000071192 None Not determined 3
LOC566119 ANGPTL6 ENSDARG00000094845 1 Not determined 2
LOC566448 SASH1 ENSDARG00000058853 1 Not determined 3
LOC569014 GGT1 ENSDARG00000018342 1 Not determined 4
LOC572369 KIRREL3 ENSDARG00000060939 3 Not determined 4
LOC794105 GGT1 ENSDARG00000087063 None Not determined 4
LOC797032 GADD45G ENSDARG00000044676 None Not determined 1
mfap4 ANGPTL6 ENSDARG00000090783 1 Not determined 2
NP_001123366.1 CCL4L2 ENSDARG00000070378 None Not determined 1
nxph1 NXPH1 ENSDARG00000033447 1 Not determined 5
osbpl1a OSBPL1A ENSDARG00000011281 3 Not determined 2
osbpl2 OSBPL1A ENSDARG00000013830 None Not determined 2
pafah1b2 PAFAH1B2 ENSDARG00000035352 None Not determined 1
PDZRN4 (1 of 2) PDZRN4 ENSDARG00000086878 1 Not determined 2
pi15a PI15 ENSDARG00000045378 1 Not determined 1
pi15b PI15 ENSDARG00000061292 None Not determined 1
plg LPA ENSDARG00000023111 2 Not determined 10
robo1 ROBO1 ENSDARG00000026784 11 Not determined 2
SACS (2 of 2) SACS ENSDARG00000062627 6 Not determined 3
SACS (1 of 2) SACS ENSDARG00000091042 None Not determined 3
SH2D6 SH2D6 ENSDARG00000090607 1 Not determined 1
shbg SHBG ENSDARG00000019492 None Not determined 5
si:ch211-234p6.10 CRP ENSDARG00000056498 None Not determined 13
si:ch211-234p6.12 CRP ENSDARG00000042613 None Not determined 13
si:ch211-234p6.13 CRP ENSDARG00000056462 None Not determined 13
si:ch211-234p6.14 CRP ENSDARG00000071454 2 Not determined 13
si:ch211-234p6.7 CRP ENSDARG00000071456 None Not determined 13
si:ch211-234p6.8 CRP ENSDARG00000071457 None Not determined 13
si:ch211-234p6.9 CRP ENSDARG00000095730 None Not determined 13
si:ch211-270n8.1 CRP ENSDARG00000045089 None Not determined 13
si:ch211-272n13.3 ANKRD30A ENSDARG00000013015 None Not determined 4
si:ch211-273a21.1 CNTN1 ENSDARG00000013647 2 2 normal 1
si:ch211-89o10.1 OSBPL1A ENSDARG00000053804 1 Not determined 2
si:dkey-222h21.12 GGT1 ENSDARG00000092350 None Not determined 4
si:dkey-222h21.13 GGT1 ENSDARG00000087054 1 Not determined 4
si:dkey-222h21.14 GGT1 ENSDARG00000075055 None Not determined 4
si:dkey-240a12.3 PDZRN4 ENSDARG00000045687 2 Not determined 2
si:dkey-264g21.1 SASH1 ENSDARG00000007179 3 Not determined 3
si:dkey-281i8.3 FGF3 ENSDARG00000078625 None Not determined 2
si:dkey-28b4.8 ATP2A2 ENSDARG00000002840 None Not determined 1
si:dkeyp-118h9.7 SACS ENSDARG00000075668 9 Not determined 3
TMEM38B TMEM38B ENSDARG00000041562 None Not determined 5
wu:fj11g02 ANGPTL6 ENSDARG00000038681 None Not determined 2
zgc:101049 CRP ENSDARG00000071051 None Not determined 13
zgc:171687 ANGPTL6 ENSDARG00000038682 None Not determined 2
zgc:173915 ANGPTL6 ENSDARG00000088745 1 Not determined 2
zgc:193706 CCL4L2 ENSDARG00000093568 1 Not determined 1
zgc:56041 EPS8 ENSDARG00000018440 1 Not determined 1
zgc:85869 GADD45G ENSDARG00000016725 1 Not determined 1
zgc:91940 C17orf62 ENSDARG00000071414 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ABO
  • BCM01
  • HLA-C
  • IL18
  • IL1RN
  • LOC51057
* quick link - http://q.sanger.ac.uk/umtbr5x7