GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoa1 APOA1 ENSDARG00000012076 1 Not determined 13
apoa1 APOA5 ENSDARG00000012076 1 Not determined 22
apoa4 APOA1 ENSDARG00000040298 1 Not determined 13
apoa4 APOA5 ENSDARG00000040298 1 Not determined 22
celsr1a CELSR2 ENSDARG00000069185 3 Not determined 17
CELSR2 CELSR2 ENSDARG00000088231 3 Not determined 17
celsr2l CELSR2 ENSDARG00000019726 1 Not determined 17
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
NP_001107902.1 SLC2A9 ENSDARG00000063288 3 1 phenotype 14
si:dkey-30k22.7 CELSR2 ENSDARG00000037286 3 Not determined 17
si:dkey-7f3.15 APOA1 ENSDARG00000094929 None Not determined 13
si:dkey-7f3.15 APOA5 ENSDARG00000094929 None Not determined 22
slc2a11b SLC2A9 ENSDARG00000093395 2 1 phenotype 14
slc2a15a SLC2A9 ENSDARG00000029894 None Not determined 14
slc2a15b SLC2A9 ENSDARG00000053269 1 Not determined 14
WDR1 WDR1 ENSDARG00000077991 2 Not determined 4
zgc:112992 APOA1 ENSDARG00000086281 None Not determined 13
zgc:112992 APOA5 ENSDARG00000086281 None Not determined 22
zgc:194131 APOA1 ENSDARG00000020866 2 Not determined 13
zgc:194131 APOA5 ENSDARG00000020866 2 Not determined 22

The following reported genes could not be linked automatically to a zebrafish gene:

  • APOC3
  • PSRC1
* quick link - http://q.sanger.ac.uk/0npwq53i