GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
camk4 CAMK4 ENSDARG00000005372 None Not determined 2
cdh5 CDH13 ENSDARG00000075549 7 Not determined 15
cntnap2 CNTNAP5 ENSDARG00000074558 1 Not determined 4
cntnap5 CNTNAP5 ENSDARG00000073802 7 Not determined 4
exoc4 EXOC4 ENSDARG00000004336 2 Not determined 2
GPC6 (4 of 4) GPC6 ENSDARG00000090456 None Not determined 9
GPC6 (3 of 4) GPC6 ENSDARG00000036468 1 Not determined 9
GPC6 (2 of 4) GPC6 ENSDARG00000086960 None Not determined 9
hs3st3b1a HS3ST3A1 ENSDARG00000059594 1 Not determined 1
hs3st3b1b HS3ST3A1 ENSDARG00000086645 None Not determined 1
hs3st3l HS3ST3A1 ENSDARG00000059903 None Not determined 1
LOC100329339 HS3ST3A1 ENSDARG00000060253 None Not determined 1
LOC100332381 CAMK4 ENSDARG00000078504 1 Not determined 2
LOC100334409 CNTNAP5 ENSDARG00000074351 None Not determined 4
LOC559157 CNTNAP5 ENSDARG00000058969 4 Not determined 4
mef2ca MEF2C ENSDARG00000029764 4 Not determined 8
mef2cb MEF2C ENSDARG00000009418 1 Not determined 8
Q5RHP7_DANRE SYNE1 ENSDARG00000009499 17 2 normal 5
si:ch211-122a20.1 CDH13 ENSDARG00000014215 1 Not determined 15
si:ch211-122m3.1 CNTNAP5 ENSDARG00000067824 6 Not determined 4
si:ch211-247h9.1 CNTN4 ENSDARG00000062880 2 Not determined 6
si:ch73-150k18.1 CNTNAP5 ENSDARG00000075189 8 Not determined 4
si:dkey-101k6.5 TGFBR2 ENSDARG00000055136 2 Not determined 2
si:dkey-150o13.1 CCL20 ENSDARG00000094511 None Not determined 1
si:dkey-155f10.1 CNTNAP5 ENSDARG00000073920 7 Not determined 4
si:dkey-48j7.2 PREX1 ENSDARG00000075793 12 Not determined 2
SYNE1 (1 of 2) SYNE1 ENSDARG00000063068 33 Not determined 5
tgfbr2 TGFBR2 ENSDARG00000034541 None Not determined 2
TGFBR2 (2 of 2) TGFBR2 ENSDARG00000059363 4 Not determined 2
tnr TNR ENSDARG00000020771 3 Not determined 1
vps37a VPS37A ENSDARG00000017119 1 Not determined 1
wdr69 WDR69 ENSDARG00000021462 1 Not determined 1
zgc:153573 CNTN4 ENSDARG00000019405 None Not determined 6
zgc:171629 GPC6 ENSDARG00000091739 None Not determined 9
zgc:195209 CCL20 ENSDARG00000093754 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C14orf118
  • SLC9A9
Short-link