cspg4

Ensembl ID:
ENSDARG00000078227
ZFIN ID:
ZDB-GENE-050519-1
Human Orthologues:
AC010724.5, AC011295.1, AC044860.1, AC135995.2, CSPG4, CSPG4P5
Human Descriptions:
chondroitin sulfate proteoglycan 4 pseudogene 5 [Source:HGNC Symbol;Acc:29403]
chondroitin sulfate proteoglycan 4 [Source:HGNC Symbol;Acc:2466]
Mouse Orthologue:
Cspg4
Mouse Description:
chondroitin sulfate proteoglycan 4 Gene [Source:MGI Symbol;Acc:MGI:2153093]

Alleles

There are 6 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa37999 Nonsense Mutation detected in F1 DNA During 2016
sa39470 Essential Splice Site Mutation detected in F1 DNA During 2016
sa14510 Nonsense Available for shipment Available now
sa24601 Nonsense Available for shipment Available now
sa15270 Nonsense Available for shipment Available now
sa12954 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa37999
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
A > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Nonsense 235 2305 3 10
Genomic Location (Zv9):
Chromosome 25 (position 6904698)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6424140
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CTACATGGACAAGACCTAACGTTGGAGCCCGTAGCCTGGAGATGTTAATC[A/T]AGACAACCATTGAGGATGCACTGTTGCTCTTCCATCCAGGACACCGAACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39470
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
G > A
Consequence:
Essential Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Essential Splice Site 1418 2305 4 10
Genomic Location (Zv9):
Chromosome 25 (position 6896022)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6415464
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TCAGGTTTCAGGATGATGACGATCCGCTTGTCAGCTTCACCTGGGAGGAT[G/A]TGAGTATTAGCACATACACACTATTTTTATGGTTGCGCTTTGTTTTGATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14510
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Nonsense 1639 2305 8 10
Genomic Location (Zv9):
Chromosome 25 (position 6864143)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6383585
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
TAATCAAACCTAACCAGCGTGGACAGTTTGAGGAGATCACCAGATTCACA[C/T]AAACTGAGGTAAATGTTGTASATTTSTAAATATGTCATAATGTACTAGCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24601
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Nonsense 1821 2305 10 10
Genomic Location (Zv9):
Chromosome 25 (position 6861801)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6381243
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TCCAGCCTGGTGCCGTGGTTTTAGAGGAGATCTTTTTGATCTCCCTCAGA[C/T]GACGAGACTCAAACCCGCCAGAGCTCGCAAGCTTGGACCTGCTTCTGGAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15270
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Nonsense 1982 2305 10 10
Genomic Location (Zv9):
Chromosome 25 (position 6861316)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6380758
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
GGTCCCGTTGAGGAGGAGGTACTCTATAAAATAACCAACGTMCCAAAATA[T/A]GCTGCTGTAATGGTAGACAGACAGCCAACCTCAGCTTTCACACAGARGCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12954
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112782 Nonsense 2062 2305 10 10
Genomic Location (Zv9):
Chromosome 25 (position 6861077)
Other Location(s):
Assembly Chromosome Position
GRCz10 25 6380519
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
ACAAAATCCCCTGCTACCCAGAGGTGCTACTGTGCTTGTARACAGAAAGT[T/A]GTTGGAYGCTWCTCCTCTGGCCAACAAAACCAGAACATCTCCAACCTTCA
Associated Phenotype:
Not determined

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