scarf1

Ensembl ID:
ENSDARG00000077285
ZFIN ID:
ZDB-GENE-030131-8778
Human Orthologue:
SCARF1
Human Description:
scavenger receptor class F, member 1 [Source:HGNC Symbol;Acc:16820]
Mouse Orthologue:
Scarf1
Mouse Description:
scavenger receptor class F, member 1 Gene [Source:MGI Symbol;Acc:MGI:2449455]

Alleles

There are 4 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa10051 Nonsense Available for shipment Available now
sa13509 Nonsense Available for shipment Available now
sa42563 Essential Splice Site Mutation detected in F1 DNA During 2017
sa14395 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa10051
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110969   None 425 None 3
ENSDART00000138401 Nonsense 408 870 7 10
Genomic Location (Zv9):
Chromosome 15 (position 27566079)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 28284319
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
TTTGTGTGTTTTTCTWCTAGGTAGCAGAGCTGGTCTTTTAGCAGGGCTTT[T/A]GATTCCTCTCTGCATATTAATACTCGCCTTGTTGKTCTGCTGCTGCTGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13509
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110969 Nonsense 64 425 2 3
ENSDART00000138401 Nonsense 509 870 9 10
Genomic Location (Zv9):
Chromosome 15 (position 27562856)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 28281096
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
AGCCATCATCCGGCTGGGTAATAGATTCATTCGAAACTGATGAGGATGGA[G/T]AAGCTGTTTACTGCGAACCACCCAGGGAAGGTAAAGCAGTTTATCTCAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42563
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2017.
Mutation:
T > C
Consequence:
Essential Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110969 Essential Splice Site 74 425 2 3
ENSDART00000138401 Essential Splice Site 519 870 9 10
Genomic Location (Zv9):
Chromosome 15 (position 27562824)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 28281064
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
GAAACTGATGAGGATGGAGAAGCTGTTTACTGCGAACCACCCAGGGAAGG[T/C]AAAGCAGTTTATCTCAGTATTTTTAATTTCACTGTCACTGTATCTATTAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14395
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110969 Nonsense 282 425 3 3
ENSDART00000138401 Nonsense 727 870 10 10
Genomic Location (Zv9):
Chromosome 15 (position 27560173)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 28278413
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
AAGGGCCTGTTCAGGCGATGCTGCGCAGACTAGGAAGCCTCCAGAGGCAA[A/T]AAGAAGAAGTTGCTAAAGGSAAGGCCCAATCGATTGTTAAGCCTCCACGR
Associated Phenotype:
Not determined

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