bcor

Ensembl ID:
ENSDARG00000017798
ZFIN ID:
ZDB-GENE-040408-1
Description:
BCL-6 corepressor [Source:RefSeq peptide;Acc:NP_991189]
Human Orthologue:
BCOR
Human Description:
BCL6 corepressor [Source:HGNC Symbol;Acc:20893]
Mouse Orthologue:
Bcor
Mouse Description:
BCL6 interacting corepressor Gene [Source:MGI Symbol;Acc:MGI:1918708]

Alleles

There are 7 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa24091 Nonsense Available for shipment Available now
sa37445 Nonsense Mutation detected in F1 DNA During 2016
sa43784 Nonsense Mutation detected in F1 DNA During 2016
sa32384 Nonsense Available for shipment Available now
sa24092 Essential Splice Site Available for shipment Available now
sa37446 Essential Splice Site Mutation detected in F1 DNA During 2016
sa12397 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa24091
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Nonsense 355 1777 3 13
ENSDART00000102106 Nonsense 355 1796 3 14
Genomic Location (Zv9):
Chromosome 22 (position 11265620)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11125788
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TAGTACTATGGAGTTCCAGAAGCCTCTGTACAGAAGTCCTTCCTCATCCT[C/A]ATCATCTTCACCATCAGTATCTCACCCTGTCTATATTAGCAGTGCATCCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37445
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
T > G
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Nonsense 758 1777 3 13
ENSDART00000102106 Nonsense 758 1796 3 14
Genomic Location (Zv9):
Chromosome 22 (position 11266830)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11126998
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CTGAGGCCCAGAACCCTGGACAAGACTTGGCACCATGATGAGCCTCCTTA[T/G]AAGCGCCAGAGCATCACTGACATAGACCCAGACTACAAATCTGAGAAGGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa43784
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Nonsense 938 1777 3 13
ENSDART00000102106 Nonsense 938 1796 3 14
Genomic Location (Zv9):
Chromosome 22 (position 11267368)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11127536
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
GGGCTCGAGCTGATGGAGCTGAATTCAGAGTTGATCGGCACCACACTAAT[C/T]GACAATATGTGGACCTGGGCAAGGATGGACTTGAAGACACAGAGTCCCAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32384
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Nonsense 981 1777 3 13
ENSDART00000102106 Nonsense 981 1796 3 14
Genomic Location (Zv9):
Chromosome 22 (position 11267499)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11127667
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
AAAGGAAAGAGATCCAGCTTGGCCAAGAGAATAGCCAACTCCTCAGGCTA[T/A]GTTGGCGACCGCTTCAAGTGCGTCACCACAGAGTTGTATGCAGACTCCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24092
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Essential Splice Site 1630 1777 12 13
ENSDART00000102106 Essential Splice Site 1649 1796 13 14
Genomic Location (Zv9):
Chromosome 22 (position 11302984)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11163152
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
ATTCACACCTTGTCTCTCATTTCTAATCGATATCTGTCTCTCTGACTCAC[A/T]GAGCCTGCCGACGACTCGTCTGGGTACGATATCCTGGCCAACCCTCCCGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37446
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
A > C
Consequence:
Essential Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Essential Splice Site 1680 1777 None 13
ENSDART00000102106 Essential Splice Site 1699 1796 None 14
Genomic Location (Zv9):
Chromosome 22 (position 11309608)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11169776
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TTGCTCTCATTTTCAGCTAATTAATCTCTCTTTCTCCCGCTCTTGTTCAC[A/C]GACCCAGAAATTGGTTGCTGCTCTCAGATGTCCTCAAGCGACTGAAGATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12397
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047442 Nonsense 1770 1777 13 13
ENSDART00000102106 Nonsense 1789 1796 14 14
Genomic Location (Zv9):
Chromosome 22 (position 11309878)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 11170046
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
AGCTGGTGGCGCTGCTGGGGTCATCGATTGAATGCTTGGACGACCGCTGG[G/T]AACCCGCTTCCAGACCTCGCTCCTGAACTATTGCACACGCACTCGGACAG
Associated Phenotype:
Not determined

GWAS

This gene's human homologue has been identified in the following GWAS studies:

(GWAS data comes from http://www.genome.gov/gwastudies/.)

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