bcan

Ensembl ID:
ENSDARG00000016736
ZFIN ID:
ZDB-GENE-030131-6045
Description:
brevican core protein [Source:RefSeq peptide;Acc:NP_001077282]
Human Orthologue:
BCAN
Human Description:
brevican [Source:HGNC Symbol;Acc:23059]
Mouse Orthologue:
Bcan
Mouse Description:
brevican Gene [Source:MGI Symbol;Acc:MGI:1096385]

Alleles

There are 3 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa36168 Nonsense Mutation detected in F1 DNA During 2016
sa1944 Essential Splice Site, Splice Site Available for shipment Available now
sa10253 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa36168
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
C > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047499 Nonsense 116 1300 3 14
ENSDART00000130700   None 191 None 5
Genomic Location (Zv9):
Chromosome 16 (position 31558741)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 29395930
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CGGGTTAAGGTGAGTGAGGCTTATAAAGGCAGAGCGTCGCTGCTCAATTA[C/A]GCTACCTCTTCAGCTGATCTCACCCTCAGACTGGAGGGATTGATTCACAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1944
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Essential Splice Site, Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047499 Splice Site None 1300 None 14
ENSDART00000130700 Essential Splice Site 103 191 2 5
Genomic Location (Zv9):
Chromosome 16 (position 31553374)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 29390563
KASP Assay ID:
554-1932.1 (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
ACGAYGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATGGTAAA[C/T]AATTAGCTGCTAATNNNGTTACGCTTGAAAAACAGTACTCTTGACTGTACGCC
Associated Phenotype:

Normal

Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037
whole organism
ZFA:0001094
quality
PATO:0000001
normal
PATO:0000461

Mutation Details

Allele Name:
sa10253
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047499   None 1300 None 14
ENSDART00000130700 Nonsense 107 191 3 5
Genomic Location (Zv9):
Chromosome 16 (position 31553287)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 29390476
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
CTWGACTGTACGCCAAAACTAGCATTTCAWATTTGWATTAGATTATTTWC[A/T]GAGAATGCAGGGTGCAGTNWGATTGTCAGTTTTTCCAAAGCAAGAAAGGT
Associated Phenotype:
Not determined

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