atf7a

Ensembl ID:
ENSDARG00000011298
ZFIN ID:
ZDB-GENE-050721-2
Description:
cyclic AMP-dependent transcription factor ATF-7 [Source:RefSeq peptide;Acc:NP_001025376]
Human Orthologue:
ATF7
Human Description:
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Mouse Orthologue:
Atf7
Mouse Description:
activating transcription factor 7 Gene [Source:MGI Symbol;Acc:MGI:2443472]

Alleles

There are 2 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa37731 Nonsense Mutation detected in F1 DNA During 2016
sa43995 Nonsense Mutation detected in F1 DNA During 2016

Mutation Details

Allele Name:
sa37731
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
C > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013563 Nonsense 157 497 5 11
Genomic Location (Zv9):
Chromosome 23 (position 27699275)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 27532097
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CATTGGCTGATTATCGTCGCAGGATTCTCCTCCAAGGCATGCCTTCAGTT[C/A]AGCTCCAACCCCAGCCATAGTGCGTCCTGGATCCCTCCCTCTGCACCTGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa43995
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013563 Nonsense 407 497 10 11
Genomic Location (Zv9):
Chromosome 23 (position 27688776)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 27521598
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CGAAACGAAGTTGCTCATCTAAAGCAGTTGCTGTTAGCCCATAAAGACTG[T/A]CCTGTCACCAACCTCCAGAAGAAAGCTGCCTATTTAGGTAAGTAGAGCTC
Associated Phenotype:
Not determined

GWAS

This gene's human homologue has been identified in the following GWAS studies:

  • Height: A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. (View Study)
  • Height: Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. (View Study)

(GWAS data comes from http://www.genome.gov/gwastudies/.)

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