kdm5bb

Ensembl ID:
ENSDARG00000003098
ZFIN ID:
ZDB-GENE-030424-1
Description:
Lysine-specific demethylase 5B-B [Source:UniProtKB/Swiss-Prot;Acc:Q6IQX0]
Human Orthologue:
KDM5B
Human Description:
lysine (K)-specific demethylase 5B [Source:HGNC Symbol;Acc:18039]
Mouse Orthologue:
Kdm5b
Mouse Description:
lysine (K)-specific demethylase 5B Gene [Source:MGI Symbol;Acc:MGI:1922855]

Alleles

There are 6 alleles of this gene:

Allele name Consequence Status Availability Estimate
sa34426 Essential Splice Site Mutation detected in F1 DNA During 2016
sa10483 Nonsense Available for shipment Available now
sa41230 Nonsense Mutation detected in F1 DNA During 2016
sa11572 Nonsense Available for shipment Available now
sa14544 Nonsense Available for shipment Available now
sa21313 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa34426
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
T > A
Consequence:
Essential Splice Site
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Essential Splice Site 175 1522 4 28
ENSDART00000108508 Essential Splice Site 175 1503 4 27
Genomic Location (Zv9):
Chromosome 8 (position 29190701)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28318619
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
GAGGATCCTGTACCCGTACAACCTCTTTCAGTCTGGGACAAATCTGCTGG[T/A]GAGTTTAACATGTAGATGTATCAGATCTATATATCACACACTTTACATAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10483
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Nonsense 315 1522 9 28
ENSDART00000108508 Nonsense 296 1503 8 27
Genomic Location (Zv9):
Chromosome 8 (position 29183696)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28311614
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
TTTATATATAAATATGKCATGTGATTTATYCGKCTATAGGTGGACCTCTA[T/A]GTGTGTTTAGTGTGTGGAAAGGGAAACGACGAGGATCGGTTGTTGCTATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41230
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2016.
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Nonsense 344 1522 9 28
ENSDART00000108508 Nonsense 325 1503 8 27
Genomic Location (Zv9):
Chromosome 8 (position 29183610)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28311528
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TCGGTTGTTGCTATGCGACGGTTGTGATGACAGCTACCACACATTCTGCT[T/A]AATCCCGCCCCTAACCGATGTTCCGAAAGGTGATTGGCGGTGCCCTAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11572
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Nonsense 382 1522 10 28
ENSDART00000108508 Nonsense 363 1503 9 27
Genomic Location (Zv9):
Chromosome 8 (position 29183321)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28311239
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
TGCTGTAAACCTCAGGAGGCATTTGGCTTCGAGCAAGCACACAGAGACTA[T/A]ACTCTYAAAGCCTTTGGGGAAATGGCAGACTCCTTCAAGTCAGATTATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14544
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Nonsense 661 1522 15 28
ENSDART00000108508 Nonsense 642 1503 14 27
Genomic Location (Zv9):
Chromosome 8 (position 29180518)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28308436
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
AGGCTGACTGTCTTGATGTGGTTCTGGCGTCAGCCGTACAGAAGGACATG[C/T]AGCTCATGATCAAAGAAGAGAGAGAGCTGCGGGAGAAAGTCCGWAAGATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21313
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000005583 Nonsense 1361 1522 26 28
ENSDART00000108508 Nonsense 1342 1503 25 27
Genomic Location (Zv9):
Chromosome 8 (position 29166195)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 28294113
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CAGGTCTCAGTCCAGAGCTGGAGGAGCTGATGGTGGAGGGTTTGGTCCTG[C/T]AGGTTTCTTTGCCTGAGACCCAGCAGCTCTACAGGCTTCTGCTGTCTGGC
Associated Phenotype:
Not determined

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