<=>End overlap alignment

Alignment #1 HSP: 202 bps / non-identical: 50 bps

Full alignment

  AJ271735.1	160356	GTATATATGAAAATAGACATATGAGGGCAAAATGCACTGATCAAGTAAAT	160405
			||||||||||||||| ||||||||||||||||||||||||||||||||||
C  KC877990.1	202	GTATATATGAAAATAAACATATGAGGGCAAAATGCACTGATCAAGTAAAT	153

  AJ271735.1	160406	GAGATGCTCTATCTGGAGTGAAGAGTTTAAAATATATTTTTGGACTAGAA	160455
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877990.1	152	GAGATGCTCTATCTGGAGTGAAGAGTTTAAAATATATTTTTGGACTAGAA	103

  AJ271735.1	160456	AAATGAATTGGACCCAAATTGAAGATAATTTTAAATGTCCTGATGAAAGT	160505
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877990.1	102	AAATGAATTGGACCCAAATTGAAGATAATTTTAAATGTCCTGATGAAAGT	53

  AJ271735.1	160506	TGTTAGAAAATTAGTTGTCTATAATATATAGAATGATACTTGAAAGAGGC	160555
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877990.1	52	TGTTAGAAAATTAGTTGTCTATAATATATAGAATGATACTTGAAAGAGGC	3

  AJ271735.1	160556	AG	160557
			||
C  KC877990.1	2	AG	1

Compact alignment

  AJ271735.1	160356	GTATATATGAAAATAGACATATGAGGGCAAAATGCACTGATCAAGTAAAT	160405
			||||||||||||||| ||||||||||||||||||||||||||||||||||
C  KC877990.1	202	GTATATATGAAAATAAACATATGAGGGCAAAATGCACTGATCAAGTAAAT	153

skip 152 bps 100% identity alignment

Overview

Query
AJ271735.1 - 240000 bps
Hit
KC877990.1 - 202 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 202 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.505020216035616055711202-1
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