<=>End overlap alignment

Alignment #1 HSP: 175 bps / non-identical: 50 bps

Full alignment

AJ271735.1	148361	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCGC	148410
			|||||||||||||||||||||||||||||||||||||||||||||||| |
KC877988.1	1	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCAC	50

AJ271735.1	148411	ACACCAAGGCTTAACAGAATTAGTTTGGGGAATACTCATTTTTACTCTAG	148460
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877988.1	51	ACACCAAGGCTTAACAGAATTAGTTTGGGGAATACTCATTTTTACTCTAG	100

AJ271735.1	148461	AGATTAGTTGGCTTAAACAACTTTACTCGTGAATTTTTTTCTTAATGGAG	148510
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877988.1	101	AGATTAGTTGGCTTAAACAACTTTACTCGTGAATTTTTTTCTTAATGGAG	150

AJ271735.1	148511	GTGAAGACCTCCCAAAGAGGAGAAG	148535
			|||||||||||||||||||||||||
KC877988.1	151	GTGAAGACCTCCCAAAGAGGAGAAG	175

Compact alignment

AJ271735.1	148361	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCGC	148410
			|||||||||||||||||||||||||||||||||||||||||||||||| |
KC877988.1	1	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCAC	50

skip 125 bps 100% identity alignment

Overview

Query
AJ271735.1 - 240000 bps
Hit
KC877988.1 - 175 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 175 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.42860175148361148535111751
Short-link