<=>End overlap alignment

Alignment #1 HSP: 575 bps / non-identical: 50 bps

Full alignment

  AJ271735.1	143865	AACAGTGACAGAAAGCCATTCCCATTCAATTACTTTTCAGGAACCATGCC	143914
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	575	AACAGTGACAGAAAGCCATTCCCATTCAATTACTTTTCAGGAACCATGCC	526

  AJ271735.1	143915	TAGTTAGTGTGGTGGTCTTTCTCCAGTGCATGGTGGGTAGCTAATTAACT	143964
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	525	TAGTTAGTGTGGTGGTCTTTCTCCAGTGCATGGTGGGTAGCTAATTAACT	476

  AJ271735.1	143965	ATCAGGTGTTGAGGCTGCCCCCAGTGGACATCACCTTTGGCTCTGTCACC	144014
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	475	ATCAGGTGTTGAGGCTGCCCCCAGTGGACATCACCTTTGGCTCTGTCACC	426

  AJ271735.1	144015	TTGTAGAAGCTCAAGTGTGGAAAAGAAAAGCTTAAAGAAGCCCTAACCAA	144064
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	425	TTGTAGAAGCTCAAGTGTGGAAAAGAAAAGCTTAAAGAAGCCCTAACCAA	376

  AJ271735.1	144065	GCTGTATCTTCGCCATTGCATCTACTCTTTGCTGCACACACTGTGCTTGC	144114
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	375	GCTGTATCTTCGCCATTGCATCTACTCTTTGCTGCACACACTGTGCTTGC	326

  AJ271735.1	144115	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACCTAAATTTCAGCAA	144164
			|||||||||||||||||||||||||||||||||||| |||||||||||||
C  KC877980.1	325	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACTTAAATTTCAGCAA	276

  AJ271735.1	144165	CAGTGAAAAACTGAGATGAAAGATGTATAATGTAGAGAACTGACTTCTCT	144214
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	275	CAGTGAAAAACTGAGATGAAAGATGTATAATGTAGAGAACTGACTTCTCT	226

  AJ271735.1	144215	CTTAAAAAGTACAGAGAGCCTGTGCTGTGAACCCCCTTCAATGGGAAAAA	144264
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	225	CTTAAAAAGTACAGAGAGCCTGTGCTGTGAACCCCCTTCAATGGGAAAAA	176

  AJ271735.1	144265	GCTGCAGTGGTGATGGCAGGCTCCTAAAGACTGCTGCTAAAAGACACAAG	144314
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	175	GCTGCAGTGGTGATGGCAGGCTCCTAAAGACTGCTGCTAAAAGACACAAG	126

  AJ271735.1	144315	AATTATACAGTTTCCCTCTATAAGTGAATCCAAAATTCACTGACGAATTC	144364
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	125	AATTATACAGTTTCCCTCTATAAGTGAATCCAAAATTCACTGACGAATTC	76

  AJ271735.1	144365	AGAGATTGAGGGCACTTGCTTGAAATCAAGGTGCTCCAACTTAGTTTAAG	144414
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877980.1	75	AGAGATTGAGGGCACTTGCTTGAAATCAAGGTGCTCCAACTTAGTTTAAG	26

  AJ271735.1	144415	ACCTCCAGACTCTAACTTTATAGAT	144439
			|||||||||||||||||||||||||
C  KC877980.1	25	ACCTCCAGACTCTAACTTTATAGAT	1

Compact alignment

skip 250 bps 100% identity alignment

  AJ271735.1	144115	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACCTAAATTTCAGCAA	144164
			|||||||||||||||||||||||||||||||||||| |||||||||||||
C  KC877980.1	325	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACTTAAATTTCAGCAA	276

skip 275 bps 100% identity alignment

Overview

Query
AJ271735.1 - 240000 bps
Hit
KC877980.1 - 575 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 575 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.8261057514386514443911575-1
Short-link