<=>End overlap alignment

Alignment #1 HSP: 591 bps / non-identical: 50 bps

Full alignment

AP000457.3	119983	AGTGAAGGTTTATTGACATTGTGACAACATGGATAATACAGATTAAGTCA	120032
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	1	AGTGAAGGTTTATTGACATTGTGACAACATGGATAATACAGATTAAGTCA	50

AP000457.3	120033	GCAAACCATAAAGATTTTCCAGTGTGCCTAATGTCTAAAATTATAATTTA	120082
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	51	GCAAACCATAAAGATTTTCCAGTGTGCCTAATGTCTAAAATTATAATTTA	100

AP000457.3	120083	GTTATCATTTAGTAGTTCCATTAAATTATTTTCTATACAGGTAATCACGT	120132
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	101	GTTATCATTTAGTAGTTCCATTAAATTATTTTCTATACAGGTAATCACGT	150

AP000457.3	120133	ATTTGATTTCTTTTCCAATATAGGCAATTTTAAACTCAGAGAGCTGGAAC	120182
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	151	ATTTGATTTCTTTTCCAATATAGGCAATTTTAAACTCAGAGAGCTGGAAC	200

AP000457.3	120183	TAATAAAACCTAGGGAATGGAAATCTAAATTATAAACCATTCTTTTACAG	120232
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	201	TAATAAAACCTAGGGAATGGAAATCTAAATTATAAACCATTCTTTTACAG	250

AP000457.3	120233	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGGC	120282
			|||||||||||||||||||||||||||||||||||||||||||||||| |
KC877783.1	251	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGAC	300

AP000457.3	120283	TATATAAAAATTATTTATAATTTGCAGGTATTAGTGGCTTAATACAGCAT	120332
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	301	TATATAAAAATTATTTATAATTTGCAGGTATTAGTGGCTTAATACAGCAT	350

AP000457.3	120333	ATATTTGCTATCAGCTTTTGCATTTTAAAAGAAAAATTAAAGACAAAAAT	120382
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	351	ATATTTGCTATCAGCTTTTGCATTTTAAAAGAAAAATTAAAGACAAAAAT	400

AP000457.3	120383	CTTAATACAAAGTAATAAACTACTAATCATAAAATTCTCTCCTATATTCT	120432
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	401	CTTAATACAAAGTAATAAACTACTAATCATAAAATTCTCTCCTATATTCT	450

AP000457.3	120433	TTTAGAACACAATGAAAGGAAATTATTTGCTTTTTATGAGAAACTGATAT	120482
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	451	TTTAGAACACAATGAAAGGAAATTATTTGCTTTTTATGAGAAACTGATAT	500

AP000457.3	120483	ACTTTCTCTCCATAGATGATGAAAATAACTTTCTTTGACTACCAAGAAAT	120532
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877783.1	501	ACTTTCTCTCCATAGATGATGAAAATAACTTTCTTTGACTACCAAGAAAT	550

AP000457.3	120533	ATATAATCAAATTTGTAGACCACTTTTAATTTTTTAAAAAA	120573
			|||||||||||||||||||||||||||||||||||||||||
KC877783.1	551	ATATAATCAAATTTGTAGACCACTTTTAATTTTTTAAAAAA	591

Compact alignment

skip 250 bps 100% identity alignment

AP000457.3	120233	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGGC	120282
			|||||||||||||||||||||||||||||||||||||||||||||||| |
KC877783.1	251	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGAC	300

skip 291 bps 100% identity alignment

Overview

Query
AP000457.3 - 165221 bps
Hit
KC877783.1 - 591 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 591 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.83080591119983120573115911
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