<=>End overlap alignment

Alignment #1 HSP: 490 bps / non-identical: 50 bps

Full alignment

AC004099.1	107223	GAATGGACTCTGAAATGATACAGATTCAAATCACAGACTTGTCAGTTTCA	107272
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	1	GAATGGACTCTGAAATGATACAGATTCAAATCACAGACTTGTCAGTTTCA	50

AC004099.1	107273	GTCAAGTTTCATCTTCTCAAAGCCCTAATTTCTTCACCTGTAAAACTGAA	107322
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	51	GTCAAGTTTCATCTTCTCAAAGCCCTAATTTCTTCACCTGTAAAACTGAA	100

AC004099.1	107323	AATTATACATCTAGAATATAATCTAGCTTCTAGAGATGGCCTCTGCACTT	107372
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	101	AATTATACATCTAGAATATAATCTAGCTTCTAGAGATGGCCTCTGCACTT	150

AC004099.1	107373	CTTGGCTCGTGGTCCTATCTCAAAGCCAGCAGGTAGCATCTGCCACTCTC	107422
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	151	CTTGGCTCGTGGTCCTATCTCAAAGCCAGCAGGTAGCATCTGCCACTCTC	200

AC004099.1	107423	TTCTTCTGTCTACTTCTGTTGTCACATCACTTTCTCCCACTCTTCCCCTC	107472
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	201	TTCTTCTGTCTACTTCTGTTGTCACATCACTTTCTCCCACTCTTCCCCTC	250

AC004099.1	107473	CTACTTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	107522
			|||| |||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	251	CTACCTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	300

AC004099.1	107523	ATTAAATTAGAATGAATGTAAAGCATATAGCACAAGGATCGGCAGGCCCT	107572
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	301	ATTAAATTAGAATGAATGTAAAGCATATAGCACAAGGATCGGCAGGCCCT	350

AC004099.1	107573	AGGTGCAAAATATTAATAAATGGTAACCAGTAGTAGTAGTAATAATAGTA	107622
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	351	AGGTGCAAAATATTAATAAATGGTAACCAGTAGTAGTAGTAATAATAGTA	400

AC004099.1	107623	ATAGTAATAGTAGTAGTATGGAATCAAAGGGCCTCACTGTGGCAATATAG	107672
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	401	ATAGTAATAGTAGTAGTATGGAATCAAAGGGCCTCACTGTGGCAATATAG	450

AC004099.1	107673	TTCATTTAGGAAGTCATTTACCTGAAATGAAGCAATAGTG	107712
			||||||||||||||||||||||||||||||||||||||||
KC877655.1	451	TTCATTTAGGAAGTCATTTACCTGAAATGAAGCAATAGTG	490

Compact alignment

skip 250 bps 100% identity alignment

AC004099.1	107473	CTACTTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	107522
			|||| |||||||||||||||||||||||||||||||||||||||||||||
KC877655.1	251	CTACCTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	300

skip 190 bps 100% identity alignment

Overview

Query
AC004099.1 - 136222 bps
Hit
KC877655.1 - 490 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 490 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.79590490107223107712114901
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