<=>End overlap alignment

Alignment #1 HSP: 423 bps / non-identical: 50 bps

Full alignment

  AC115090.8	9218	CACCTTGGTGTCGAGTCATTGCACAGATGGGCACGCTCATGGGAACAACC	9267
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	423	CACCTTGGTGTCGAGTCATTGCACAGATGGGCACGCTCATGGGAACAACC	374

  AC115090.8	9268	CTGAGCCCGGCTCCCAGAGGCTCACATGGGTGGTGTAAAGTAAATGTGTG	9317
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	373	CTGAGCCCGGCTCCCAGAGGCTCACATGGGTGGTGTAAAGTAAATGTGTG	324

  AC115090.8	9318	CCTGCCCTGGCCAAACCGGCACCTTTACTGGCAAGTAGGAGGCCACAGGG	9367
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	323	CCTGCCCTGGCCAAACCGGCACCTTTACTGGCAAGTAGGAGGCCACAGGG	274

  AC115090.8	9368	TATGGTGGGAAAGACCTGAATTCTGGTCCCAATTTTGCCTCCAACTTACT	9417
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	273	TATGGTGGGAAAGACCTGAATTCTGGTCCCAATTTTGCCTCCAACTTACT	224

  AC115090.8	9418	GGGTAGCCTCTGTCAGGACCCTCCCTGCCTCAGTTTTCCCATCTGTAAAA	9467
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	223	GGGTAGCCTCTGTCAGGACCCTCCCTGCCTCAGTTTTCCCATCTGTAAAA	174

  AC115090.8	9468	GAAATGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	9517
			|||| |||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	173	GAAAGGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	124

  AC115090.8	9518	GGTTGTAGGAATCACACTCTTCCTCATCTTCCTTCTCCCGGCAGGCTGCC	9567
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	123	GGTTGTAGGAATCACACTCTTCCTCATCTTCCTTCTCCCGGCAGGCTGCC	74

  AC115090.8	9568	CCAGGTCCCAGGGCCTTCTGCGTCCCAAGGATCATCTTGACAGAGTGTGC	9617
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	73	CCAGGTCCCAGGGCCTTCTGCGTCCCAAGGATCATCTTGACAGAGTGTGC	24

  AC115090.8	9618	CCCCAACCCTCCCTCCCCGCCAG	9640
			|||||||||||||||||||||||
C  KC877653.1	23	CCCCAACCCTCCCTCCCCGCCAG	1

Compact alignment

skip 250 bps 100% identity alignment

  AC115090.8	9468	GAAATGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	9517
			|||| |||||||||||||||||||||||||||||||||||||||||||||
C  KC877653.1	173	GAAAGGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	124

skip 123 bps 100% identity alignment

Overview

Query
AC115090.8 - 173716 bps
Hit
KC877653.1 - 423 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 423 bps)
Best alignment cartoon

Alternate alignments

Short-link