<=>End overlap alignment

Alignment #1 HSP: 543 bps / non-identical: 50 bps

Full alignment

AC015938.17	176248	AGGGGAGTCCCATTCTCCTCACCCACTCCCTTCTCATTTCCATAGGCTGA	176297
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	1	AGGGGAGTCCCATTCTCCTCACCCACTCCCTTCTCATTTCCATAGGCTGA	50

AC015938.17	176298	GTCTCCAGAATTCCATGGTGGTATCTATCCAGAAGCACCTTCCTGAAGCG	176347
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	51	GTCTCCAGAATTCCATGGTGGTATCTATCCAGAAGCACCTTCCTGAAGCG	100

AC015938.17	176348	CCCAGCCCAGCCGGTGTTTCCCTGGCCCTCAGAGCTGTCCATTTCACAGA	176397
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	101	CCCAGCCCAGCCGGTGTTTCCCTGGCCCTCAGAGCTGTCCATTTCACAGA	150

AC015938.17	176398	GAGCAAAATCAAGGCTCTGAGAGTGGTGCCAGCTGCCTAACGACCCCTCG	176447
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	151	GAGCAAAATCAAGGCTCTGAGAGTGGTGCCAGCTGCCTAACGACCCCTCG	200

AC015938.17	176448	CCCCCATTTCCCCTTTCCCATCCCAACAAGAGCACAAATCACGAGCCTTC	176497
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	201	CCCCCATTTCCCCTTTCCCATCCCAACAAGAGCACAAATCACGAGCCTTC	250

AC015938.17	176498	AGGTTTTGCACAATTTTGCTAAATTTCCTGCCTGAATGGCACAGGGCCTG	176547
			|||||||||||||||||||| |||||||||||||||||||||||||||||
KC877652.1	251	AGGTTTTGCACAATTTTGCTCAATTTCCTGCCTGAATGGCACAGGGCCTG	300

AC015938.17	176548	ACCCTCTGCAGGTGCTCAGGAAATGTTCGTGGAATCAATAAAGGACAGCT	176597
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	301	ACCCTCTGCAGGTGCTCAGGAAATGTTCGTGGAATCAATAAAGGACAGCT	350

AC015938.17	176598	AAATCTCCCATCTTCTGAAAGCTCTTTGTCTCCTCCCTCCCTCCTGCTCC	176647
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	351	AAATCTCCCATCTTCTGAAAGCTCTTTGTCTCCTCCCTCCCTCCTGCTCC	400

AC015938.17	176648	CCACACTCCATCAGGGTGGCTGGTGGCCTCCTCCTCTGGAAAGCCTCTCG	176697
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	401	CCACACTCCATCAGGGTGGCTGGTGGCCTCCTCCTCTGGAAAGCCTCTCG	450

AC015938.17	176698	AATGGCTCCTTTCTCTTCTTTGCCCCTGCTGCTGCTCTAGTGGAGTCCTT	176747
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877652.1	451	AATGGCTCCTTTCTCTTCTTTGCCCCTGCTGCTGCTCTAGTGGAGTCCTT	500

AC015938.17	176748	GCTAGCACTTACGCGGGCCACTGCACTAGGCTGCTCAGAGGTC	176790
			|||||||||||||||||||||||||||||||||||||||||||
KC877652.1	501	GCTAGCACTTACGCGGGCCACTGCACTAGGCTGCTCAGAGGTC	543

Compact alignment

skip 250 bps 100% identity alignment

AC015938.17	176498	AGGTTTTGCACAATTTTGCTAAATTTCCTGCCTGAATGGCACAGGGCCTG	176547
			|||||||||||||||||||| |||||||||||||||||||||||||||||
KC877652.1	251	AGGTTTTGCACAATTTTGCTCAATTTCCTGCCTGAATGGCACAGGGCCTG	300

skip 243 bps 100% identity alignment

Overview

Query
AC015938.17 - 180393 bps
Hit
KC877652.1 - 543 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 543 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81580543176248176790115431
Short-link