<=>End overlap alignment

Alignment #1 HSP: 481 bps / non-identical: 50 bps

Full alignment

AC004099.1	93797	GCAGCACTACGGGGCTGTAACTAAGAGTTCCTCGCACGTGGGAAGCTGAA	93846
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	1	GCAGCACTACGGGGCTGTAACTAAGAGTTCCTCGCACGTGGGAAGCTGAA	50

AC004099.1	93847	CACCTTTGTAATCTTAAGCGCATGGGCCCCTGTTCATCCTAGTGACTTGC	93896
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	51	CACCTTTGTAATCTTAAGCGCATGGGCCCCTGTTCATCCTAGTGACTTGC	100

AC004099.1	93897	ATCTATGTGAAATCAACCCAACAAAGACAAGACCAAGAAAAGGCTTAGTA	93946
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	101	ATCTATGTGAAATCAACCCAACAAAGACAAGACCAAGAAAAGGCTTAGTA	150

AC004099.1	93947	GCCTGACATTCTTCTACACTTGTATTTTGGTTAGAGAAGTTTAACAAGGG	93996
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	151	GCCTGACATTCTTCTACACTTGTATTTTGGTTAGAGAAGTTTAACAAGGG	200

AC004099.1	93997	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTGAAGCTTTATAAT	94046
			||||||||||||||||||||||||||||||||||||| ||||||||||||
KC877651.1	201	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTAAAGCTTTATAAT	250

AC004099.1	94047	GTCTAAACACATCAATTAGAGCAGTTGTTTATTAAAATACAAACAAGGGA	94096
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	251	GTCTAAACACATCAATTAGAGCAGTTGTTTATTAAAATACAAACAAGGGA	300

AC004099.1	94097	GAAACCACACCATCTTTTAAAATACAGGCGCGAATTCCACATCACGCAGA	94146
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	301	GAAACCACACCATCTTTTAAAATACAGGCGCGAATTCCACATCACGCAGA	350

AC004099.1	94147	AGACAACGCATTTCGCTAAGGGCCACAGCATTCACTGGTTAATAAAGCCA	94196
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	351	AGACAACGCATTTCGCTAAGGGCCACAGCATTCACTGGTTAATAAAGCCA	400

AC004099.1	94197	CAGCTACAAAGTAATGAGATGTCCCACATGAATACTTTTTAACCACTTAC	94246
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877651.1	401	CAGCTACAAAGTAATGAGATGTCCCACATGAATACTTTTTAACCACTTAC	450

AC004099.1	94247	ATTCACGTCAACATATAAATAATGGAATTAA	94277
			|||||||||||||||||||||||||||||||
KC877651.1	451	ATTCACGTCAACATATAAATAATGGAATTAA	481

Compact alignment

skip 200 bps 100% identity alignment

AC004099.1	93997	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTGAAGCTTTATAAT	94046
			||||||||||||||||||||||||||||||||||||| ||||||||||||
KC877651.1	201	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTAAAGCTTTATAAT	250

skip 231 bps 100% identity alignment

Overview

Query
AC004099.1 - 136222 bps
Hit
KC877651.1 - 481 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 481 bps)
Best alignment cartoon

Alternate alignments

Short-link