<=>End overlap alignment

Alignment #1 HSP: 534 bps / non-identical: 50 bps

Full alignment

  AC015938.17	115830	GAGCTGGGCTAAGAGGGGCAGTCTTAGGCGGGGTCCAGGCTACCCTGGTG	115879
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	534	GAGCTGGGCTAAGAGGGGCAGTCTTAGGCGGGGTCCAGGCTACCCTGGTG	485

  AC015938.17	115880	AGGTCTCCATCCTTTCAAAGCTCCCCTGGAGTTGTTCTCGAAGCCTCCCA	115929
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	484	AGGTCTCCATCCTTTCAAAGCTCCCCTGGAGTTGTTCTCGAAGCCTCCCA	435

  AC015938.17	115930	GAGTCAGCTTGTTCAGCTTGAATAATATCTGTCCCTGGCCTTGTCCCCTC	115979
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	434	GAGTCAGCTTGTTCAGCTTGAATAATATCTGTCCCTGGCCTTGTCCCCTC	385

  AC015938.17	115980	CCCACACATTTCACCTTCAAAGGGCCAGGAGAAATTTCCCTAATTAATTA	116029
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	384	CCCACACATTTCACCTTCAAAGGGCCAGGAGAAATTTCCCTAATTAATTA	335

  AC015938.17	116030	ACTCCTCTGCAGCCTGCCCTCCATGTCATTGGGTGATTAATCGTCACTGT	116079
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	334	ACTCCTCTGCAGCCTGCCCTCCATGTCATTGGGTGATTAATCGTCACTGT	285

  AC015938.17	116080	GACTTTAAATCCAGGGGCGGAGGTAAGTTGGCAGGGGTGGAGGCCAGAAG	116129
			||||||||||||||||||||||| ||||||||||||||||||||||||||
C  KC877650.1	284	GACTTTAAATCCAGGGGCGGAGGGAAGTTGGCAGGGGTGGAGGCCAGAAG	235

  AC015938.17	116130	CAGGGATGCTGGGGGTTGGGGGAGGCAGCCTGAGGGCCTTTCCTGGGGTT	116179
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	234	CAGGGATGCTGGGGGTTGGGGGAGGCAGCCTGAGGGCCTTTCCTGGGGTT	185

  AC015938.17	116180	GGAAGACCCCCACCTCATCCCCATTCTTGTCCTTGCCCAGGGCCTGGCCA	116229
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	184	GGAAGACCCCCACCTCATCCCCATTCTTGTCCTTGCCCAGGGCCTGGCCA	135

  AC015938.17	116230	AGAGGCCCCAGAGCCAGACCACAAATACATCCATCAATAATCAATCAATG	116279
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	134	AGAGGCCCCAGAGCCAGACCACAAATACATCCATCAATAATCAATCAATG	85

  AC015938.17	116280	AGTCTCAAATAGAGACGGTGAGAACTAGGCCATTCTGGGAGAGGCGGGGT	116329
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877650.1	84	AGTCTCAAATAGAGACGGTGAGAACTAGGCCATTCTGGGAGAGGCGGGGT	35

  AC015938.17	116330	GGCTCCTGCCTATTCTAAAGTCTGCAAAACAGGG	116363
			||||||||||||||||||||||||||||||||||
C  KC877650.1	34	GGCTCCTGCCTATTCTAAAGTCTGCAAAACAGGG	1

Compact alignment

skip 250 bps 100% identity alignment

  AC015938.17	116080	GACTTTAAATCCAGGGGCGGAGGTAAGTTGGCAGGGGTGGAGGCCAGAAG	116129
			||||||||||||||||||||||| ||||||||||||||||||||||||||
C  KC877650.1	284	GACTTTAAATCCAGGGGCGGAGGGAAGTTGGCAGGGGTGGAGGCCAGAAG	235

skip 234 bps 100% identity alignment

Overview

Query
AC015938.17 - 180393 bps
Hit
KC877650.1 - 534 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 534 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.8127053411583011636311534-1
Short-link