<=>End overlap alignment

Alignment #1 HSP: 564 bps / non-identical: 50 bps

Full alignment

AC015938.17	51063	TAATCCACGAATGGCTGTGGAATGGAGCTACAGGGAGCGGCAGATGGGAT	51112
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	1	TAATCCACGAATGGCTGTGGAATGGAGCTACAGGGAGCGGCAGATGGGAT	50

AC015938.17	51113	CCTTCACACAGCATGTCTGCCCACGTAGGACCTGAACATAGCTGGGCCCC	51162
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	51	CCTTCACACAGCATGTCTGCCCACGTAGGACCTGAACATAGCTGGGCCCC	100

AC015938.17	51163	TTCAGCCTCTGTCCTACCCCTGCGCCCACCCTATAGCCATGCAGCACACA	51212
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	101	TTCAGCCTCTGTCCTACCCCTGCGCCCACCCTATAGCCATGCAGCACACA	150

AC015938.17	51213	CACGGCCAGTTCCCAACGTGTGGGTGAACATTGCGGGTTTCACTGAAGTT	51262
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	151	CACGGCCAGTTCCCAACGTGTGGGTGAACATTGCGGGTTTCACTGAAGTT	200

AC015938.17	51263	TTTGTGGGAAACCAGGGGAGCAGATGGCATCATACAGCACACTCCAGCCT	51312
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	201	TTTGTGGGAAACCAGGGGAGCAGATGGCATCATACAGCACACTCCAGCCT	250

AC015938.17	51313	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCATCGTCATCTCTCTTC	51362
			|||||||||||||||||||||||||||||||||| |||||||||||||||
KC877645.1	251	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCTTCGTCATCTCTCTTC	300

AC015938.17	51363	CAGGCAGTGCTCTTCCCCTCCTCTCCAATCCCAGTTTCTTTAACAAAACC	51412
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	301	CAGGCAGTGCTCTTCCCCTCCTCTCCAATCCCAGTTTCTTTAACAAAACC	350

AC015938.17	51413	AAATCCTCATTTTACATCCCCAATGAAGCAAAACAAAGCCGGATAGGACA	51462
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	351	AAATCCTCATTTTACATCCCCAATGAAGCAAAACAAAGCCGGATAGGACA	400

AC015938.17	51463	CAGACCACAGGGCTCCTGCTCCACCGGTATCTCATTCAACCTCCTTTATC	51512
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	401	CAGACCACAGGGCTCCTGCTCCACCGGTATCTCATTCAACCTCCTTTATC	450

AC015938.17	51513	CCCATCTTTTTATTATGGCCAACCATTTTATCCTCACGCAGGCCTCTGTG	51562
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	451	CCCATCTTTTTATTATGGCCAACCATTTTATCCTCACGCAGGCCTCTGTG	500

AC015938.17	51563	CCCTGCACACACAACAGCTTCCTCAAGCTGCCCTCCATGTGGGTGCTGTG	51612
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877645.1	501	CCCTGCACACACAACAGCTTCCTCAAGCTGCCCTCCATGTGGGTGCTGTG	550

AC015938.17	51613	AGGCTCCGAGAGGA	51626
			||||||||||||||
KC877645.1	551	AGGCTCCGAGAGGA	564

Compact alignment

skip 250 bps 100% identity alignment

AC015938.17	51313	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCATCGTCATCTCTCTTC	51362
			|||||||||||||||||||||||||||||||||| |||||||||||||||
KC877645.1	251	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCTTCGTCATCTCTCTTC	300

skip 264 bps 100% identity alignment

Overview

Query
AC015938.17 - 180393 bps
Hit
KC877645.1 - 564 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 564 bps)
Best alignment cartoon

Alternate alignments

Short-link