<=>End overlap alignment

Alignment #1 HSP: 543 bps / non-identical: 50 bps

Full alignment

  AC015938.17	57337	GGCTCAGGGGATCCCCAGATGCTTCCAGATCTACATTAGGGACCCTAGCC	57386
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	543	GGCTCAGGGGATCCCCAGATGCTTCCAGATCTACATTAGGGACCCTAGCC	494

  AC015938.17	57387	CTCTCTTATCACCCCGTTTATTTCCTTCTAAGCACTTATAACATGACATT	57436
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	493	CTCTCTTATCACCCCGTTTATTTCCTTCTAAGCACTTATAACATGACATT	444

  AC015938.17	57437	CTCTCAAAGATTTGTTCACTTATTCATTCACTTGTTTATTACCTATCTCT	57486
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	443	CTCTCAAAGATTTGTTCACTTATTCATTCACTTGTTTATTACCTATCTCT	394

  AC015938.17	57487	CCCCATGAGAATGCAAGCGCTGTGAGGGCAAGGACTTTATTTATATATAT	57536
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	393	CCCCATGAGAATGCAAGCGCTGTGAGGGCAAGGACTTTATTTATATATAT	344

  AC015938.17	57537	CTGATTCCCTGGAGCCTGCATTGGTTCCTAGCACAGAACAGGACTCAATA	57586
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	343	CTGATTCCCTGGAGCCTGCATTGGTTCCTAGCACAGAACAGGACTCAATA	294

  AC015938.17	57587	AATAGTGTTGAATAAGCAAACGTGTTGAACCTGATACTCAGTTTCCTTAT	57636
			|||||||||||||||||||| |||||||||||||||||||||||||||||
C  KC877642.1	293	AATAGTGTTGAATAAGCAAATGTGTTGAACCTGATACTCAGTTTCCTTAT	244

  AC015938.17	57637	CTATAAAATGGGATAATAATATCTGCTCTGCAGGGTCATAAAGAGCTTGG	57686
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	243	CTATAAAATGGGATAATAATATCTGCTCTGCAGGGTCATAAAGAGCTTGG	194

  AC015938.17	57687	CACACAGCAGGTGACCCATAAATTATGCTACCCTCACTCCACCCCCTGCA	57736
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	193	CACACAGCAGGTGACCCATAAATTATGCTACCCTCACTCCACCCCCTGCA	144

  AC015938.17	57737	GACCCCATTAAATTAAGCACTGAAATGCCCAGAGAAGCTCTCCTACTTAA	57786
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	143	GACCCCATTAAATTAAGCACTGAAATGCCCAGAGAAGCTCTCCTACTTAA	94

  AC015938.17	57787	AAAAAGCCCTTGGATGAATCCTCTTTTTTAGAGGGCAAATAGCTTTTCTT	57836
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	93	AAAAAGCCCTTGGATGAATCCTCTTTTTTAGAGGGCAAATAGCTTTTCTT	44

  AC015938.17	57837	TTTATTTCTTTATTTCTTTTTTTAAAATATAATTGTAAAAATT	57879
			|||||||||||||||||||||||||||||||||||||||||||
C  KC877642.1	43	TTTATTTCTTTATTTCTTTTTTTAAAATATAATTGTAAAAATT	1

Compact alignment

skip 250 bps 100% identity alignment

  AC015938.17	57587	AATAGTGTTGAATAAGCAAACGTGTTGAACCTGATACTCAGTTTCCTTAT	57636
			|||||||||||||||||||| |||||||||||||||||||||||||||||
C  KC877642.1	293	AATAGTGTTGAATAAGCAAATGTGTTGAACCTGATACTCAGTTTCCTTAT	244

skip 243 bps 100% identity alignment

Overview

Query
AC015938.17 - 180393 bps
Hit
KC877642.1 - 543 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 543 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81580543573375787911543-1
Short-link