<=>End overlap alignment

Alignment #1 HSP: 550 bps / non-identical: 50 bps

Full alignment

  AC015938.17	19269	TCACCTCTCACCATACACAGAAATTAACTCAAGATGTAAAACAATACAAC	19318
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	550	TCACCTCTCACCATACACAGAAATTAACTCAAGATGTAAAACAATACAAC	501

  AC015938.17	19319	TTCTGGAAGAAAACATGGGGGAAGACTTTTGGGATCTTGAGGTAGGCAGA	19368
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	500	TTCTGGAAGAAAACATGGGGGAAGACTTTTGGGATCTTGAGGTAGGCAGA	451

  AC015938.17	19369	GATTTCTTGGGTAGAACATAGTCATAGGCTGGAATTGCATATCATTGAGC	19418
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	450	GATTTCTTGGGTAGAACATAGTCATAGGCTGGAATTGCATATCATTGAGC	401

  AC015938.17	19419	ACAAGCTCTGAAATCAGAAAACATCTCTTTGATTCCTGTCTTATTGTATA	19468
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	400	ACAAGCTCTGAAATCAGAAAACATCTCTTTGATTCCTGTCTTATTGTATA	351

  AC015938.17	19469	ACTGGCTGCATTGAACTTAGGTAAGTTACTTACTTTCTCTGAGCTCATAT	19518
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	350	ACTGGCTGCATTGAACTTAGGTAAGTTACTTACTTTCTCTGAGCTCATAT	301

  AC015938.17	19519	GCCTTCTTGTACAATGAAGGTATAATACCACCTACCTCTCTGGATGCCTG	19568
			|||||||||||||||||||||||||||| |||||||||||||||||||||
C  KC877639.1	300	GCCTTCTTGTACAATGAAGGTATAATACTACCTACCTCTCTGGATGCCTG	251

  AC015938.17	19569	TAAAGTTCAGAGAACTAATGCATGTGAAATAGTCTTTTTTAAAATTTTTA	19618
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	250	TAAAGTTCAGAGAACTAATGCATGTGAAATAGTCTTTTTTAAAATTTTTA	201

  AC015938.17	19619	TTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTTCAGTGG	19668
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	200	TTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTTCAGTGG	151

  AC015938.17	19669	TGCAATGTCATTGCAACCTCCGCTTCCCAGGCTCAAGCAATTCTCCCACC	19718
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	150	TGCAATGTCATTGCAACCTCCGCTTCCCAGGCTCAAGCAATTCTCCCACC	101

  AC015938.17	19719	TCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCATGCTCAGCT	19768
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	100	TCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCATGCTCAGCT	51

  AC015938.17	19769	AATGTTTTAGTTTTATTTATTTATTTATTTATTTGCAGAGATGAGATCTT	19818
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877639.1	50	AATGTTTTAGTTTTATTTATTTATTTATTTATTTGCAGAGATGAGATCTT	1

Compact alignment

skip 250 bps 100% identity alignment

  AC015938.17	19519	GCCTTCTTGTACAATGAAGGTATAATACCACCTACCTCTCTGGATGCCTG	19568
			|||||||||||||||||||||||||||| |||||||||||||||||||||
C  KC877639.1	300	GCCTTCTTGTACAATGAAGGTATAATACTACCTACCTCTCTGGATGCCTG	251

skip 250 bps 100% identity alignment

Overview

Query
AC015938.17 - 180393 bps
Hit
KC877639.1 - 550 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 550 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81820550192691981811550-1
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