<=>End overlap alignment

Alignment #1 HSP: 564 bps / non-identical: 50 bps

Full alignment

AC129915.6	116375	TGAGCACAGGGGTTTTTGGGTGAAGTGATTCAGAGTCTACTTCCTGGTGA	116424
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	1	TGAGCACAGGGGTTTTTGGGTGAAGTGATTCAGAGTCTACTTCCTGGTGA	50

AC129915.6	116425	CCTTTCTGAGCCCCCTTGCTTTGATTTTAGTAATGGGTTAGCAGTGTCCA	116474
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	51	CCTTTCTGAGCCCCCTTGCTTTGATTTTAGTAATGGGTTAGCAGTGTCCA	100

AC129915.6	116475	CCGTCAACACTGTTGTGAGGCTTGGGGGTCTTCAAAGTAAACCATTTTCC	116524
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	101	CCGTCAACACTGTTGTGAGGCTTGGGGGTCTTCAAAGTAAACCATTTTCC	150

AC129915.6	116525	GAGTGCTGGGCGCACAGCCAGGACACACAGTGAGGACTGGCTGTAATTAC	116574
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	151	GAGTGCTGGGCGCACAGCCAGGACACACAGTGAGGACTGGCTGTAATTAC	200

AC129915.6	116575	TGTGTTATTGTCGGCTTTATCAGGTCCCAGGCCAAAACAGTCCCGTGCTG	116624
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	201	TGTGTTATTGTCGGCTTTATCAGGTCCCAGGCCAAAACAGTCCCGTGCTG	250

AC129915.6	116625	GAGAAGAAAGCTCTACTGAGGCTCTATTCTTAAATGTCTTTTTCTTTTTG	116674
			|||||||||||||||||||||||||| |||||||||||||||||||||||
KC877196.1	251	GAGAAGAAAGCTCTACTGAGGCTCTACTCTTAAATGTCTTTTTCTTTTTG	300

AC129915.6	116675	TAACATAAAAACCTTCTAATTCTAGAATGCAAAGTAAATAGGTAATAAAG	116724
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	301	TAACATAAAAACCTTCTAATTCTAGAATGCAAAGTAAATAGGTAATAAAG	350

AC129915.6	116725	CAATTGCATGCATTAGGAAGAGCTTATTTATTTTTCAGTGTGGGCCAAGC	116774
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	351	CAATTGCATGCATTAGGAAGAGCTTATTTATTTTTCAGTGTGGGCCAAGC	400

AC129915.6	116775	TTGAGATGTCTAAGAAATGTTTGCGGAGTGAATGCATGCTCTTCCCTAGA	116824
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	401	TTGAGATGTCTAAGAAATGTTTGCGGAGTGAATGCATGCTCTTCCCTAGA	450

AC129915.6	116825	GAACAGGCTCTGGGTGAATTTGACACCAAAACTATCTAACAATTTTAGAG	116874
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	451	GAACAGGCTCTGGGTGAATTTGACACCAAAACTATCTAACAATTTTAGAG	500

AC129915.6	116875	AACTGAATATTTTAAAAACAAAATTAATGATTTTTTTAAGGAATCAAGAT	116924
			||||||||||||||||||||||||||||||||||||||||||||||||||
KC877196.1	501	AACTGAATATTTTAAAAACAAAATTAATGATTTTTTTAAGGAATCAAGAT	550

AC129915.6	116925	CTACATGCTAAATG	116938
			||||||||||||||
KC877196.1	551	CTACATGCTAAATG	564

Compact alignment

skip 250 bps 100% identity alignment

AC129915.6	116625	GAGAAGAAAGCTCTACTGAGGCTCTATTCTTAAATGTCTTTTTCTTTTTG	116674
			|||||||||||||||||||||||||| |||||||||||||||||||||||
KC877196.1	251	GAGAAGAAAGCTCTACTGAGGCTCTACTCTTAAATGTCTTTTTCTTTTTG	300

skip 264 bps 100% identity alignment

Overview

Query
AC129915.6 - 162359 bps
Hit
KC877196.1 - 564 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 564 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.82270564116375116938115641
Short-link