<=>End overlap alignment

Alignment #1 HSP: 547 bps / non-identical: 50 bps

Full alignment

  AC129915.6	73470	CACAGGCAGGGTCCCTGGAAGAGGTGGCATTTAGCTTTGGCCTCGAAAGA	73519
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	547	CACAGGCAGGGTCCCTGGAAGAGGTGGCATTTAGCTTTGGCCTCGAAAGA	498

  AC129915.6	73520	TGGCTGGGGGATCATTAGCTTCTGTAGGAACAAACCCCATAGATGTTGCA	73569
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	497	TGGCTGGGGGATCATTAGCTTCTGTAGGAACAAACCCCATAGATGTTGCA	448

  AC129915.6	73570	TTGGCCTAGTAGGGGGGCAGTTTGTTTTTTCTGGTTGGCCTGGTCATCAG	73619
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	447	TTGGCCTAGTAGGGGGGCAGTTTGTTTTTTCTGGTTGGCCTGGTCATCAG	398

  AC129915.6	73620	AATAACTCATCTGGGTAATACAGGGAGGGGTTTTCTAGGGGCTCGGTTAC	73669
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	397	AATAACTCATCTGGGTAATACAGGGAGGGGTTTTCTAGGGGCTCGGTTAC	348

  AC129915.6	73670	ACACACTGGACTTGTTTTTAACATATAAGAGAGGCTGGGAGCATTTCTGA	73719
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	347	ACACACTGGACTTGTTTTTAACATATAAGAGAGGCTGGGAGCATTTCTGA	298

  AC129915.6	73720	AAAATGGCCTATAGAAACACACGGCAATGACAACCTGTAAGGAGGATAGA	73769
			||||||||||||||||||||| ||||||||||||||||||||||||||||
C  KC877191.1	297	AAAATGGCCTATAGAAACACAGGGCAATGACAACCTGTAAGGAGGATAGA	248

  AC129915.6	73770	ACTGGCTGCAATCCATACCTGTAATATTCAAACTCATTATTAATCTTCCC	73819
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	247	ACTGGCTGCAATCCATACCTGTAATATTCAAACTCATTATTAATCTTCCC	198

  AC129915.6	73820	CCAAATGTCTATATAGAGAACCAGGTGATATCCAGGTTAAGCAAATATTC	73869
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	197	CCAAATGTCTATATAGAGAACCAGGTGATATCCAGGTTAAGCAAATATTC	148

  AC129915.6	73870	AAGAGAAATGTAAATGTGACCTTCCTTAATTAACAAATTTGCTAACATTT	73919
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	147	AAGAGAAATGTAAATGTGACCTTCCTTAATTAACAAATTTGCTAACATTT	98

  AC129915.6	73920	CTCATCACTGCGGAGTTGCTGTAGGATGTTCAGCTGCCCCTTGAATTTAC	73969
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	97	CTCATCACTGCGGAGTTGCTGTAGGATGTTCAGCTGCCCCTTGAATTTAC	48

  AC129915.6	73970	ATGTGGAGTAACAAACAAGGAAGCATATGTAATGTGCTTTGCCGTTT	74016
			|||||||||||||||||||||||||||||||||||||||||||||||
C  KC877191.1	47	ATGTGGAGTAACAAACAAGGAAGCATATGTAATGTGCTTTGCCGTTT	1

Compact alignment

skip 250 bps 100% identity alignment

  AC129915.6	73720	AAAATGGCCTATAGAAACACACGGCAATGACAACCTGTAAGGAGGATAGA	73769
			||||||||||||||||||||| ||||||||||||||||||||||||||||
C  KC877191.1	297	AAAATGGCCTATAGAAACACAGGGCAATGACAACCTGTAAGGAGGATAGA	248

skip 247 bps 100% identity alignment

Overview

Query
AC129915.6 - 162359 bps
Hit
KC877191.1 - 547 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 547 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81720547734707401611547-1
Short-link