<=>End overlap alignment

Alignment #1 HSP: 560 bps / non-identical: 50 bps

Full alignment

  AC129915.6	139651	TATGTGGTGGGACCGTTTTTGAATCTGAACTAAATTAAATGATGGAAAAC	139700
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	560	TATGTGGTGGGACCGTTTTTGAATCTGAACTAAATTAAATGATGGAAAAC	511

  AC129915.6	139701	GACCTTGGGTGAGTTCTTCATGGCTGTACTTCCTGGAATGATACAATTTT	139750
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	510	GACCTTGGGTGAGTTCTTCATGGCTGTACTTCCTGGAATGATACAATTTT	461

  AC129915.6	139751	TCAAAATAATTTGTTTCCTCGAAATGACACCAACACCTATAGTTAAGTTT	139800
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	460	TCAAAATAATTTGTTTCCTCGAAATGACACCAACACCTATAGTTAAGTTT	411

  AC129915.6	139801	AAATTTATGGGACTAGGTGAGTGTTATTTTGTGAGACATAGCATTATGCT	139850
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	410	AAATTTATGGGACTAGGTGAGTGTTATTTTGTGAGACATAGCATTATGCT	361

  AC129915.6	139851	TACATAGAATAATTTATCGTTTGATGTTCAATATCATTTTATTTAAGCAT	139900
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	360	TACATAGAATAATTTATCGTTTGATGTTCAATATCATTTTATTTAAGCAT	311

  AC129915.6	139901	AACTGTGGAGAACCATTGAAGTGACTGTATAATTACTTCATATAAATACT	139950
			||||||||||||||||| ||||||||||||||||||||||||||||||||
C  KC877185.1	310	AACTGTGGAGAACCATTCAAGTGACTGTATAATTACTTCATATAAATACT	261

  AC129915.6	139951	TAATAGACAACTTTACCATTAACTATTTTCCTACTACTTTATAACCGATT	140000
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	260	TAATAGACAACTTTACCATTAACTATTTTCCTACTACTTTATAACCGATT	211

  AC129915.6	140001	CTATTTTCAATTGATAAGTGATTTTTTCCCATTTAAGTACTGATTTGCAG	140050
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	210	CTATTTTCAATTGATAAGTGATTTTTTCCCATTTAAGTACTGATTTGCAG	161

  AC129915.6	140051	TTTGGCCCATATTATTTTGCACTGAGATGGCATAAATGCCACATCCTTCC	140100
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	160	TTTGGCCCATATTATTTTGCACTGAGATGGCATAAATGCCACATCCTTCC	111

  AC129915.6	140101	CGCACTTAAGGCATGCAATTTGCAGAATAAGACGTAAATTTTAAGTAGGT	140150
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	110	CGCACTTAAGGCATGCAATTTGCAGAATAAGACGTAAATTTTAAGTAGGT	61

  AC129915.6	140151	TTGGAATCTTTTGTAGGACTACTTTTATTTCAGCCTTTGACATAATATAA	140200
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877185.1	60	TTGGAATCTTTTGTAGGACTACTTTTATTTCAGCCTTTGACATAATATAA	11

  AC129915.6	140201	GCTTGTTAAT	140210
			||||||||||
C  KC877185.1	10	GCTTGTTAAT	1

Compact alignment

skip 250 bps 100% identity alignment

  AC129915.6	139901	AACTGTGGAGAACCATTGAAGTGACTGTATAATTACTTCATATAAATACT	139950
			||||||||||||||||| ||||||||||||||||||||||||||||||||
C  KC877185.1	310	AACTGTGGAGAACCATTCAAGTGACTGTATAATTACTTCATATAAATACT	261

skip 260 bps 100% identity alignment

Overview

Query
AC129915.6 - 162359 bps
Hit
KC877185.1 - 560 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 560 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.8214056013965114021011560-1
Short-link