<=>End overlap alignment

Alignment #1 HSP: 548 bps / non-identical: 50 bps

Full alignment

  AC129915.6	144838	TAATTGACAGCATGCATTCAGGTTGCTCCCCAGAGCAGGCAGTGACCTTC	144887
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	548	TAATTGACAGCATGCATTCAGGTTGCTCCCCAGAGCAGGCAGTGACCTTC	499

  AC129915.6	144888	TTTTCCTTGCCTGTTTTTGGAGGAAGTGAGAGCGTGGTATTCTTAAAAAA	144937
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	498	TTTTCCTTGCCTGTTTTTGGAGGAAGTGAGAGCGTGGTATTCTTAAAAAA	449

  AC129915.6	144938	AATTCAGCCCTTCATTTTCCCTGTATGCAGACCAAACAGCACTGTCCTGG	144987
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	448	AATTCAGCCCTTCATTTTCCCTGTATGCAGACCAAACAGCACTGTCCTGG	399

  AC129915.6	144988	CACCGTGAATGTTTCTCATGCATATCGTTTCCCCAGAGTTTAACGCCAAT	145037
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	398	CACCGTGAATGTTTCTCATGCATATCGTTTCCCCAGAGTTTAACGCCAAT	349

  AC129915.6	145038	AAAAATGTCAGGTGCTAATCTAAATGCTGTCTGTGTATTGACTGATTCAA	145087
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	348	AAAAATGTCAGGTGCTAATCTAAATGCTGTCTGTGTATTGACTGATTCAA	299

  AC129915.6	145088	TTCTCATAGCATACATAGAACACAGTCCTTGGTTTCCATTCTGAAGACAG	145137
			|||||||||||||||||||||| |||||||||||||||||||||||||||
C  KC877183.1	298	TTCTCATAGCATACATAGAACATAGTCCTTGGTTTCCATTCTGAAGACAG	249

  AC129915.6	145138	AAACTGAGTCAGCAGGGAGAGGACCATGGGCTAAGGAACTCGCCAAAGAG	145187
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	248	AAACTGAGTCAGCAGGGAGAGGACCATGGGCTAAGGAACTCGCCAAAGAG	199

  AC129915.6	145188	AAGAGCCTGGAAGCGGCTCCAGGGTTTCTGCTTCCAGAAGGGTTTCCACT	145237
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	198	AAGAGCCTGGAAGCGGCTCCAGGGTTTCTGCTTCCAGAAGGGTTTCCACT	149

  AC129915.6	145238	TCCAGAAGGGTTACCTGTGGCCCAGACTCCTCTCTCAGGGACCTCAGAGC	145287
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	148	TCCAGAAGGGTTACCTGTGGCCCAGACTCCTCTCTCAGGGACCTCAGAGC	99

  AC129915.6	145288	TGAGTCCAGGGCCCAGAACGTTGCTGCCAAGGGCTTCTCCTCAGACTGTA	145337
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	98	TGAGTCCAGGGCCCAGAACGTTGCTGCCAAGGGCTTCTCCTCAGACTGTA	49

  AC129915.6	145338	TGTTTGAGAAGCTGGGCCACTTAAGTAAGCTACATTTAGCCACCATGA	145385
			||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877183.1	48	TGTTTGAGAAGCTGGGCCACTTAAGTAAGCTACATTTAGCCACCATGA	1

Compact alignment

skip 250 bps 100% identity alignment

  AC129915.6	145088	TTCTCATAGCATACATAGAACACAGTCCTTGGTTTCCATTCTGAAGACAG	145137
			|||||||||||||||||||||| |||||||||||||||||||||||||||
C  KC877183.1	298	TTCTCATAGCATACATAGAACATAGTCCTTGGTTTCCATTCTGAAGACAG	249

skip 248 bps 100% identity alignment

Overview

Query
AC129915.6 - 162359 bps
Hit
KC877183.1 - 548 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 548 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.8175054814483814538511548-1
Short-link