<=>End overlap alignment

Alignment #1 HSP: 345 bps / non-identical: 350 bps

Full alignment

C  FP245402.5	33495	GGACAGGAGGCTCCAGAGGCAAAGACGGAGCCCAGGGCTAGGGCGGCAGG	33446
			|||||||| |||||||||||| |||||||||||||||||||||| |||||
  FP245534.1	1	GGACAGGAAGCTCCAGAGGCAGAGACGGAGCCCAGGGCTAGGGCAGCAGG	50

C  FP245402.5	33445	TGTCAGGGCTGTGGCTTCAGCTTGGTGTCTGTCCCGGGCGTTCTGCATTG	33396
			||||||||||||||||||||||||| |||||||| |||| ||||||  ||
  FP245534.1	51	TGTCAGGGCTGTGGCTTCAGCTTGGCGTCTGTCCTGGGCCTTCTGCGCTG	100

C  FP245402.5	33395	GTTCCCGACTCTGGGATGTGTTATTTATGTGCCTGATTACAGCAGGTGGC	33346
			|||||| |||||||||||||||||||||||||||||||||||| || |||
  FP245534.1	101	GTTCCCAACTCTGGGATGTGTTATTTATGTGCCTGATTACAGC-GGCGGC	149

C  FP245402.5	33345	TCCCACCTCACGATTTCTGGAAAGTCCTCAGAAGCCGCGTATAAGACCAA	33296
			||||||||||||||||||||||||||||||||||||||||| ||||||||
  FP245534.1	150	TCCCACCTCACGATTTCTGGAAAGTCCTCAGAAGCCGCGTACAAGACCAA	199

C  FP245402.5	33295	GAACGGGCCTCACACGCAGCTGCTCCTGGGCAGAAACGACTCACTGTTTC	33246
			|||||||||||||| |||||||||||||||||||||||||||||||||||
  FP245534.1	200	GAACGGGCCTCACATGCAGCTGCTCCTGGGCAGAAACGACTCACTGTTTC	249

C  FP245402.5	33245	CCTGGCCTAGACACACACAACAC----ACACACACAATACTCGCACTACA	33200
			||||||||||| |||||||||||    |||||||||| || | || ||||
  FP245534.1	250	CCTGGCCTAGATACACACAACACGCTAACACACACAAGACACACA-TACA	298

C  FP245402.5	33199	CACAACACAC---ACACA-ACACACACAATA-ATACACTACACACA-ACA	33156
			||||||||||   ||||| |||||| ||| | || ||| | ||||| |||
  FP245534.1	299	CACAACACACACAACACATACACACGCAACACATGCACAAAACACATACA	348

C  FP245402.5	33155	CACAC	33151
			|||||
  FP245534.1	349	CACAC	353

Compact alignment

C  FP245402.5	33495	GGACAGGAGGCTCCAGAGGCAAAGACGGAGCCCAGGGCTAGGGCGGCAGG	33446
			|||||||| |||||||||||| |||||||||||||||||||||| |||||
  FP245534.1	1	GGACAGGAAGCTCCAGAGGCAGAGACGGAGCCCAGGGCTAGGGCAGCAGG	50

C  FP245402.5	33445	TGTCAGGGCTGTGGCTTCAGCTTGGTGTCTGTCCCGGGCGTTCTGCATTG	33396
			||||||||||||||||||||||||| |||||||| |||| ||||||  ||
  FP245534.1	51	TGTCAGGGCTGTGGCTTCAGCTTGGCGTCTGTCCTGGGCCTTCTGCGCTG	100

C  FP245402.5	33395	GTTCCCGACTCTGGGATGTGTTATTTATGTGCCTGATTACAGCAGGTGGC	33346
			|||||| |||||||||||||||||||||||||||||||||||| || |||
  FP245534.1	101	GTTCCCAACTCTGGGATGTGTTATTTATGTGCCTGATTACAGC-GGCGGC	149

C  FP245402.5	33345	TCCCACCTCACGATTTCTGGAAAGTCCTCAGAAGCCGCGTATAAGACCAA	33296
			||||||||||||||||||||||||||||||||||||||||| ||||||||
  FP245534.1	150	TCCCACCTCACGATTTCTGGAAAGTCCTCAGAAGCCGCGTACAAGACCAA	199

C  FP245402.5	33295	GAACGGGCCTCACACGCAGCTGCTCCTGGGCAGAAACGACTCACTGTTTC	33246
			|||||||||||||| |||||||||||||||||||||||||||||||||||
  FP245534.1	200	GAACGGGCCTCACATGCAGCTGCTCCTGGGCAGAAACGACTCACTGTTTC	249

C  FP245402.5	33245	CCTGGCCTAGACACACACAACAC----ACACACACAATACTCGCACTACA	33200
			||||||||||| |||||||||||    |||||||||| || | || ||||
  FP245534.1	250	CCTGGCCTAGATACACACAACACGCTAACACACACAAGACACACA-TACA	298

C  FP245402.5	33199	CACAACACAC---ACACA-ACACACACAATA-ATACACTACACACA-ACA	33156
			||||||||||   ||||| |||||| ||| | || ||| | ||||| |||
  FP245534.1	299	CACAACACACACAACACATACACACGCAACACATGCACAAAACACATACA	348

skip 5 bps 100% identity alignment

Overview

Query
FP245402.5 - 35426 bps
Hit
FP245534.1 - 37162 bps
Total alignments
21
Best alignment
alignment #1 (HSP: 345 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
190.652413453315133495-113531
281.994128822311223993-128478293541
379.893608762311623991-134600354791
482.052886502334423993-121306219511
581.832505681299213559-1741979901
679.512465901668517274116659172631
792.8322829615702159971769779891
891.112273061569415999-110737110511
992.8322529310476107681769779891
1088.282193161568315998123134234661
1176.662165751299313567-122836234651
1288.32053031046710769-110738110531
1385.251983191045110769123128234661
1473.431957491569716445-110740115221
1574.891946021668417285122817234651
1687.51873081569015997128052283551
1790.5718526576467910-1772679901
1888.51842881614816435128058283441
1988.341812841615216435-123913241951
2086.817930537324036-128053283551
2186.9617630121138214381769279901
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