<=>End overlap alignment

Alignment #1 HSP: 2503 bps / non-identical: 1400 bps

Full alignment

AC087217.1	18453	GGGAGGAGTCGCGAGTAGTGAGGTGAGTTGTTTTTTATCCCTTGCCCTAG	18502
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	1	GGGAGGAGTCGCGAGTAGTGAGGTGAGTTGTTTTTTATCCCTTGCCCTAG	50

AC087217.1	18503	GTAGAAGCCAGTAGTAGAGTAGTGAGGAGTTTTAGCCCTTGCCGTGAGTA	18552
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	51	GTAGAAGCCAGTAGTAGAGTAGTGAGGAGTTTTAGCCCTTGCCGTGAGTA	100

AC087217.1	18553	GAAGTAGAGTAAGAGAAGTAGAATAGGAGTAGTTTAGCCCCTGCCCTAAG	18602
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	101	GAAGTAGAGTAAGAGAAGTAGAATAGGAGTAGTTTAGCCCCTGCCCTAAG	150

AC087217.1	18603	AAGAAGCTGCTGGGGAAGGGAGCTGTAAAAGAAAAACCCCGAAGTAAAGT	18652
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	151	AAGAAGCTGCTGGGGAAGGGAGCTGTAAAAGAAAAACCCCGAAGTAAAGT	200

AC087217.1	18653	TGCTGCATGAACCCAACTTGGTGTCTGTGTTGTTCCTGTCTCGCCACCGG	18702
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	201	TGCTGCATGAACCCAACTTGGTGTCTGTGTTGTTCCTGTCTCGCCACCGG	250

AC087217.1	18703	CTCGGAGGACCGGGACAAATGGTGGCCCATACGCCGTGAAAACAGCAGTA	18752
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	251	CTCGGAGGACCGGGACAAATGGTGGCCCATACGCCGTGAAAACAGCAGTA	300

AC087217.1	18753	GGGAAATTTTGGCAAACAGAGGTAAGGAAACCTTAGTAAACAGCGGTAAG	18802
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	301	GGGAAATTTTGGCAAACAGAGGTAAGGAAACCTTAGTAAACAGCGGTAAG	350

AC087217.1	18803	AAATTTTAGTAAACAGCTGTAAGGAAATTTTGGTAAGCAATGGTATTTAA	18852
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	351	AAATTTTAGTAAACAGCTGTAAGGAAATTTTGGTAAGCAATGGTATTTAA	400

AC087217.1	18853	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCACTGA	18902
			||||||||||||||||||||||||||||||||||||||||||||||    
FO203517.1	401	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCA----	446

AC087217.1	18903	GAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTT	18952
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	18953	GAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAG	19002
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19003	CCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTT	19052
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19053	TCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT	19102
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19103	GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATT	19152
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19153	AGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAG	19202
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19203	GCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCT	19252
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19253	GCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCA	19302
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19303	ACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTA	19352
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19353	GATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTT	19402
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19403	TTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGA	19452
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19453	TTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGA	19502
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19503	CATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTG	19552
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19553	CATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTC	19602
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19603	TCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAG	19652
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19653	CGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGT	19702
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19703	CATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAA	19752
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19753	AGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAG	19802
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19803	TCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCG	19852
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19853	TATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGC	19902
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19903	TCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTT	19952
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19953	ATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAG	20002
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20003	TGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTG	20052
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20053	AGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAA	20102
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20103	AATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAAC	20152
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20153	CATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTA	20202
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20203	CCAAAATCATTAGGGGATTCATCAGGACTAAGCATTAAAGTTCTCAGTTA	20252
			                                  ||||||||||||||||
FO203517.1	447	----------------------------------TTAAAGTTCTCAGTTA	462

AC087217.1	20253	GAGACTATTAGGTTCCCGGTAAGTGGGAAGATTCAAGTTCTCGGTTAGAG	20302
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	463	GAGACTATTAGGTTCCCGGTAAGTGGGAAGATTCAAGTTCTCGGTTAGAG	512

AC087217.1	20303	ACCATTAGACCATTAGGTTTCTGGATTAGGGACTATTAAGGTTCTCAGGT	20352
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	513	ACCATTAGACCATTAGGTTTCTGGATTAGGGACTATTAAGGTTCTCAGGT	562

AC087217.1	20353	ATAGAGACGAAGGTAAGGTTCCCGAGAAAAAAGGGACGAAGCATTAAGAT	20402
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	563	ATAGAGACGAAGGTAAGGTTCCCGAGAAAAAAGGGACGAAGCATTAAGAT	612

AC087217.1	20403	TCTCAGGAATAGAGACGAAGGGAATTTCAGCAACATGGGTTCAATTGCGA	20452
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	613	TCTCAGGAATAGAGACGAAGGGAATTTCAGCAACATGGGTTCAATTGCGA	662

AC087217.1	20453	CTAAAATGACAATGAAAATGTTAGTCATCTGGATCTTGGTCAGGGCGTGC	20502
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	663	CTAAAATGACAATGAAAATGTTAGTCATCTGGATCTTGGTCAGGGCGTGC	712

AC087217.1	20503	TTGAGGGACACCAATGGAAAGTACAATAAGGAGATTGCTTTTCAGGCTAG	20552
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	713	TTGAGGGACACCAATGGAAAGTACAATAAGGAGATTGCTTTTCAGGCTAG	762

AC087217.1	20553	CCGCCGAAAGTCTAAACAGCTTAGACAACAAACCAAAGATAAGAAAGAGA	20602
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	763	CCGCCGAAAGTCTAAACAGCTTAGACAACAAACCAAAGATAAGAAAGAGA	812

AC087217.1	20603	AGAAGGAATCTAGCTCTGAAGGGTCTATTAGTGACAGCAACAAGACTGAT	20652
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	813	AGAAGGAATCTAGCTCTGAAGGGTCTATTAGTGACAGCAACAAGACTGAT	862

AC087217.1	20653	AGTGAAAGCTGTCGTCGGATGTTCTGCTGGAGGTTGAGGCGCGGTAGGCC	20702
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	863	AGTGAAAGCTGTCGTCGGATGTTCTGCTGGAGGTTGAGGCGCGGTAGGCC	912

AC087217.1	20703	GCCCAAACCATCAGCCACTCTGTTGCCTTCTCCTCCCCTCCATAAAGATG	20752
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	913	GCCCAAACCATCAGCCACTCTGTTGCCTTCTCCTCCCCTCCATAAAGATG	962

AC087217.1	20753	AGGGAGACAAAAAGGGAAAGCATAGTATGGGTGATATTTTTTATTTGTGG	20802
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	963	AGGGAGACAAAAAGGGAAAGCATAGTATGGGTGATATTTTTTATTTGTGG	1012

AC087217.1	20803	ATCCTCTAATGTGGAAGTGGAAGAGGTATTTGGGACCCTAACTAAATGCC	20852
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	1013	ATCCTCTAATGTGGAAGTGGAAGAGGTATTTGGGACCCTAACTAAATGCC	1062

AC087217.1	20853	TCTTGGAGAAGTGGAATTTGGTGATAGCCCCAGAAAAAGTTCAGAAGACA	20902
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	1063	TCTTGGAGAAGTGGAATTTGGTGATAGCCCCAGAAAAAGTTCAGAAGACA	1112

AC087217.1	20903	GACATACAACACTATTTAGGTACTAAAGTGAGAGATGCTGTTGTCGAGCC	20952
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203517.1	1113	GACATACAACACTATTTAGGTACTAAAGTGAGAGATGCTGTTGTCGAGCC	1162

AC087217.1	20953	ACT	20955
			|||
FO203517.1	1163	ACT	1165

Compact alignment

skip 400 bps 100% identity alignment

AC087217.1	18853	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCACTGA	18902
			||||||||||||||||||||||||||||||||||||||||||||||    
FO203517.1	401	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCA----	446

AC087217.1	18903	GAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTT	18952
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	18953	GAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAG	19002
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19003	CCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTT	19052
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19053	TCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT	19102
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19103	GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATT	19152
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19153	AGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAG	19202
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19203	GCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCT	19252
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19253	GCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCA	19302
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19303	ACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTA	19352
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19353	GATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTT	19402
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19403	TTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGA	19452
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19453	TTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGA	19502
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19503	CATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTG	19552
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19553	CATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTC	19602
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19603	TCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAG	19652
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19653	CGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGT	19702
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19703	CATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAA	19752
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19753	AGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAG	19802
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19803	TCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCG	19852
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19853	TATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGC	19902
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19903	TCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTT	19952
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	19953	ATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAG	20002
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20003	TGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTG	20052
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20053	AGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAA	20102
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20103	AATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAAC	20152
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20153	CATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTA	20202
			                                                  
FO203517.1	447	--------------------------------------------------	446

AC087217.1	20203	CCAAAATCATTAGGGGATTCATCAGGACTAAGCATTAAAGTTCTCAGTTA	20252
			                                  ||||||||||||||||
FO203517.1	447	----------------------------------TTAAAGTTCTCAGTTA	462

skip 703 bps 100% identity alignment

Overview

Query
AC087217.1 - 77366 bps
Hit
FO203517.1 - 1165 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2503 bps)
Best alignment cartoon

Alternate alignments

Short-link