<=>End overlap alignment

Alignment #1 HSP: 1566 bps / non-identical: 1400 bps

Full alignment

AJ851868.3	1138898	AATGTTTGTGCTAACCATCGGGACACATCCCATGAGTTCTGAAGCAGTGT	1138947
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203502.1	1	AATGTTTGTGCTAACCATCGGGACACATCCCATGAGTTCTGAAGCAGTGT	50

AJ851868.3	1138948	GTTGTTCTTCATGCATGGCCCTTTTGTAGAGCTGTGAGTGTAGGGGAAGA	1138997
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203502.1	51	GTTGTTCTTCATGCATGGCCCTTTTGTAGAGCTGTGAGTGTAGGGGAAGA	100

AJ851868.3	1138998	GGGGGGAGAGAGNATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA	1139047
			|                                                 
FO203502.1	101	G-------------------------------------------------	101

AJ851868.3	1139048	TATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT	1139097
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139098	CTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC	1139147
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139148	CGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTAC	1139197
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139198	GTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACT	1139247
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139248	GCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCT	1139297
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139298	GAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAA	1139347
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139348	CACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTG	1139397
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139398	CGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGA	1139447
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139448	ATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATT	1139497
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139498	TTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAA	1139547
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139548	ACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGA	1139597
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139598	ATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTC	1139647
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139648	ACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATG	1139697
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139698	ATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGT	1139747
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139748	AATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCAC	1139797
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139798	GTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACC	1139847
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139848	CGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAAC	1139897
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139898	GCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATG	1139947
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139948	AATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATT	1139997
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139998	GAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCG	1140047
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140048	TGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCG	1140097
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140098	CCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCC	1140147
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140148	AGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAA	1140197
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140198	AAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTG	1140247
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140248	ACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGC	1140297
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140298	ACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTAT	1140347
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140348	GGGGGAGAGAGAGCCCGTGTCCAGCCAGAGATCCTGTGCTCTGGGCAGGC	1140397
			||||||||||||||||||||||||||||||||||||||||||||||||||
FO203502.1	102	GGGGGAGAGAGAGCCCGTGTCCAGCCAGAGATCCTGTGCTCTGGGCAGGC	151

AJ851868.3	1140398	AGACACGGGAGGACAACGGAACACTTTTCACTCGGCCTTTGGTGGGCATC	1140447
			||||||||||||||||| ||||||||||||||||||||||||||||||||
FO203502.1	152	AGACACGGGAGGACAACCGAACACTTTTCACTCGGCCTTTGGTGGGCATC	201

AJ851868.3	1140448	TGGCTGTGTGAAGTTA	1140463
			||||||||||||||||
FO203502.1	202	TGGCTGTGTGAAGTTA	217

Compact alignment

skip 100 bps 100% identity alignment

AJ851868.3	1138998	GGGGGGAGAGAGNATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA	1139047
			|                                                 
FO203502.1	101	G-------------------------------------------------	101

AJ851868.3	1139048	TATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT	1139097
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139098	CTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC	1139147
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139148	CGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTAC	1139197
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139198	GTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACT	1139247
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139248	GCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCT	1139297
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139298	GAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAA	1139347
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139348	CACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTG	1139397
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139398	CGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGA	1139447
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139448	ATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATT	1139497
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139498	TTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAA	1139547
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139548	ACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGA	1139597
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139598	ATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTC	1139647
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139648	ACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATG	1139697
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139698	ATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGT	1139747
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139748	AATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCAC	1139797
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139798	GTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACC	1139847
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139848	CGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAAC	1139897
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139898	GCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATG	1139947
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139948	AATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATT	1139997
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1139998	GAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCG	1140047
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140048	TGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCG	1140097
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140098	CCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCC	1140147
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140148	AGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAA	1140197
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140198	AAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTG	1140247
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140248	ACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGC	1140297
			                                                  
FO203502.1	102	--------------------------------------------------	101

AJ851868.3	1140298	ACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTAT	1140347
			                                                  
FO203502.1	102	--------------------------------------------------	101

skip 50 bps 100% identity alignment

AJ851868.3	1140398	AGACACGGGAGGACAACGGAACACTTTTCACTCGGCCTTTGGTGGGCATC	1140447
			||||||||||||||||| ||||||||||||||||||||||||||||||||
FO203502.1	152	AGACACGGGAGGACAACCGAACACTTTTCACTCGGCCTTTGGTGGGCATC	201

skip 16 bps 100% identity alignment

Overview

Query
AJ851868.3 - 1593281 bps
Hit
FO203502.1 - 217 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 1566 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.53920156611388981140463112171
Short-link