<=>End overlap alignment

Alignment #1 HSP: 259 bps / non-identical: 50 bps

Full alignment

  AC018452.11	41355	AACAAAAACATGAATAGTAGCTGCTGTTTTTAGGAAGTCTGTAAACCAAA	41404
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  FJ695204.1	255	AACAAAAACATGAATAGTAGCTGCTGTTTTTAGGAAGTCTGTAAACCAAA	206

  AC018452.11	41405	GAAAATCAGGTCAGGGAGATACTATCAGCTATTCCAATCTTTTCCCCACA	41454
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  FJ695204.1	205	GAAAATCAGGTCAGGGAGATACTATCAGCTATTCCAATCTTTTCCCCACA	156

  AC018452.11	41455	TATACTTACTGCGTCTCAGCTCCTAGTAGCATCTCCACTTTCTCATTCGC	41504
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  FJ695204.1	155	TATACTTACTGCGTCTCAGCTCCTAGTAGCATCTCCACTTTCTCATTCGC	106

  AC018452.11	41505	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTGACTGACTGGCAGAGCTC	41554
			|||||||||||||||||||||||||||||||||    |||||||||||||
C  FJ695204.1	105	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTG----ACTGGCAGAGCTC	60

  AC018452.11	41555	TGTCTTGAATAGAGCATTGTGGAGCTGTTCTTCCCTGGAGAAGAATTAAG	41604
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  FJ695204.1	59	TGTCTTGAATAGAGCATTGTGGAGCTGTTCTTCCCTGGAGAAGAATTAAG	10

  AC018452.11	41605	CTCTTCATT	41613
			|||||||||
C  FJ695204.1	9	CTCTTCATT	1

Compact alignment

skip 150 bps 100% identity alignment

  AC018452.11	41505	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTGACTGACTGGCAGAGCTC	41554
			|||||||||||||||||||||||||||||||||    |||||||||||||
C  FJ695204.1	105	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTG----ACTGGCAGAGCTC	60

skip 59 bps 100% identity alignment

Overview

Query
AC018452.11 - 171523 bps
Hit
FJ695204.1 - 255 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 259 bps)
Best alignment cartoon

Alternate alignments

Short-link