<=>End overlap alignment
Alignment #1
HSP: 1263 bps / non-identical: 1271 bps
Full alignment
C CU463841.14 79198 AGAGTCATAGAATTAAAAATACAACATACTGATCATAGCCTCATCTCAGG 79149 |||||||||||||||||||||||| |||||||||| ||||||||| |||| CU302430.14 59857 AGAGTCATAGAATTAAAAATACAAAATACTGATCACAGCCTCATCCCAGG 59906 C CU463841.14 79148 AAAAAGACACAGTGTGTGCTCATCTTTGCACTTAAGCCGATGTTAGTTTT 79099 || ||| |||| |||||||||| |||||||||| |||||||||||| ||| CU302430.14 59907 AAGAAGTCACAATGTGTGCTCAGCTTTGCACTTGAGCCGATGTTAGGTTT 59956 C CU463841.14 79098 TAATTCCCTATGAACAAGATAAACTGTACTCAGACGTTTGAATGATGATT 79049 | |||||| |||||||||||| | | |||||||| |||||||| | ||| CU302430.14 59957 TGATTCCCCATGAACAAGATACATTTTACTCAGATGTTTGAATACTCATT 60006 C CU463841.14 79048 TGTAACAGACCATGA-ACCCCAATATCCAGAGCATTCCTGCAGAGAAAGG 79000 | ||| |||||||| | ||||| ||| |||||||||||||||||||||| CU302430.14 60007 TTTAATGGACCATGACATCCCAACATCTAGAGCATTCCTGCAGAGAAAGG 60056 C CU463841.14 78999 TGTGCCCTTTCCCATCTTCCCTCCAACTGCAGACCCTCCAGGGTCTCACC 78950 ||| | |||||||||||||||||| ||||||||||||||||||||||||| CU302430.14 60057 TGTCCTCTTTCCCATCTTCCCTCCCACTGCAGACCCTCCAGGGTCTCACC 60106 C CU463841.14 78949 TGTTGAAGATGAAAGAGAAGCATCACATTCTTGGGCAACGGCGCCGCCTG 78900 ||||||||||||||||||||||||||||||||||||||| |||||||||| CU302430.14 60107 TGTTGAAGATGAAAGAGAAGCATCACATTCTTGGGCAACAGCGCCGCCTG 60156 C CU463841.14 78899 GTGGAAGAAACAAAAACGACAGCGTCTGAGCCCACAGAGCTGAGGGTAAA 78850 |||||||||||||| | |||||||||||||||||||||| |||||||||| CU302430.14 60157 GTGGAAGAAACAAAGATGACAGCGTCTGAGCCCACAGAGTTGAGGGTAAA 60206 C CU463841.14 78849 GGGGATCCAGGCTGCTGAGCTGCCCCAGGGCCTCCTTCCTGTCTGCACTT 78800 |||||| ||||| |||||||||||||||| ||||||||||||||||||| CU302430.14 60207 GGGGATGCAGGCAGCTGAGCTGCCCCAGGACCTCCTTCCTGTCTGCACTG 60256 C CU463841.14 78799 CTCCAGGGCTCTCAGGTCTCAGACCGCCCTGCTCTCATCAAACTTACATC 78750 ||||||||||||||||||||||||||||||||||||||||||| |||||| CU302430.14 60257 CTCCAGGGCTCTCAGGTCTCAGACCGCCCTGCTCTCATCAAAC-TACATC 60305 C CU463841.14 78749 CAGAAGATCTTCACGTGCTTCTCCACCCGTGGGAAGAAAACTCCCTGTAA 78700 ||||||| ||| | |||||| ||||||||||||||||||||||||||||| CU302430.14 60306 CAGAAGAACTTTATGTGCTTTTCCACCCGTGGGAAGAAAACTCCCTGTAA 60355 C CU463841.14 78699 GAGGGGAGGCAGGAGGCAGAGCCATGGGTGCTAAAAGGAGCTGCAAAGCC 78650 ||||||||| |||||||||||||||| ||||||||||||||||||||||| CU302430.14 60356 GAGGGGAGGTAGGAGGCAGAGCCATGAGTGCTAAAAGGAGCTGCAAAGCC 60405 C CU463841.14 78649 CCAAACAAAGCAGTTCCAGAACTCGGACAGAAACCATGGTGTTGGTTCTT 78600 ||||| | |||||||||||||||||||||| |||||||||||||||||| CU302430.14 60406 CCAAAGAGAGCAGTTCCAGAACTCGGACAGGGACCATGGTGTTGGTTCTT 60455 C CU463841.14 78599 TGATGTCAGCTACGTGTGGGGTTAACTAAAACCCCAAAATGGAAGACACC 78550 ||||| |||||| ||||| ||||||||||||| ||||||||| ||||| CU302430.14 60456 TGATGCGAGCTACATGTGGCGTTAACTAAAACCTCAAAATGGAGCACACC 60505 C CU463841.14 78549 ACCTGTGAGACGTTTTTGCTTAATTT-------GAAGATCAATTTCTGAT 78507 | ||||||| | |||||||||||||| ||||||||||||||||| CU302430.14 60506 ATCTGTGAGGC-TTTTTGCTTAATTTGAAGTGGGAAGATCAATTTCTGAT 60554 C CU463841.14 78506 CCTTTTCTTTGAGGTAGGAAGACACACCTGTAGTACAGAATATTTGAGCA 78457 ||||||||||||| |||||||||||||||||| | ||||||||||| | | CU302430.14 60555 CCTTTTCTTTGAGATAGGAAGACACACCTGTAATCCAGAATATTTGTGTA 60604 C CU463841.14 78456 GGAGCCCCTCCCACTTTCTGATCTGGGCCACGCCTTCTGCTGGAAGCCTA 78407 |||||||||||| ||||||||| ||||||||||||||||||||||||||| CU302430.14 60605 GGAGCCCCTCCCCCTTTCTGATGTGGGCCACGCCTTCTGCTGGAAGCCTA 60654 C CU463841.14 78406 CATGAAGACCTGGAAGAAGGAAAGGCTTGCTCTGTGTCTGCTTGCTCCTG 78357 ||||||||| |||||||||||||||||||||||||||||||||||||||| CU302430.14 60655 CATGAAGACATGGAAGAAGGAAAGGCTTGCTCTGTGTCTGCTTGCTCCTG 60704 C CU463841.14 78356 TTCCTGTTATCTGTCGAAGATTCCTGCTTGTCCTCCCTTGCTCTGAATAA 78307 |||||||||||||| ||||||||||||||||||||||||||||||||| CU302430.14 60705 CTCCTGTTATCTGTCTGAGATTCCTGCTTGTCCTCCCTTGCTCTGAATAA 60754 C CU463841.14 78306 TGATGGCAGACTTACATTTATTTATGAATGCTTAGGCTTTATGCTAGGCC 78257 ||| ||||||||||||||||||||||||||| || ||||||||||||||| CU302430.14 60755 TGACGGCAGACTTACATTTATTTATGAATGCCTACGCTTTATGCTAGGCC 60804 C CU463841.14 78256 TGTTCCCAGCTATCTCATAATTCAGTTATCCCAGTCATACTATTCTAAGT 78207 | |||||||| ||||||||||||||||||||| |||||||||||||||| CU302430.14 60805 TTTTCCCAGCATTCTCATAATTCAGTTATCCCATTCATACTATTCTAAGT 60854 C CU463841.14 78206 TCTGCCACGTGGCTGGTCACCTCTCCTCAGTTTCACACATCCTGCTTCCT 78157 ||||| | |||||||||||||||||||||||||| ||||||| |||||| CU302430.14 60855 TCTGCAATGTGGCTGGTCACCTCTCCTCAGTTTCGCACATCCCACTTCCT 60904 C CU463841.14 78156 CCACGTCTGGGTGGCAAATCCCCCATGCTTCTCTCTTCCCAGAGTTCCTC 78107 | ||||||||||| |||||||||||||||||| || || ||||||||| CU302430.14 60905 CTGAGTCTGGGTGGCGAATCCCCCATGCTTCTCTTTTTCCTGAGTTCCTC 60954 C CU463841.14 78106 TCTCTGCCCAGAATCCTGCCTTCTACTCTCCTTTGCTACAGGACATAGGG 78057 |||||||||| ||||||||||||||||||||||| ||| ||||||||||| CU302430.14 60955 TCTCTGCCCATAATCCTGCCTTCTACTCTCCTTTTCTA-AGGACATAGGG 61003 C CU463841.14 78056 TTTTTATTTTACCACTCAGAAGGTGCTTTAGGTAGGCAAGGTAGGACAGA 78007 |||||||||||||||||||||||| ||||||||||||||||||||||||| CU302430.14 61004 TTTTTATTTTACCACTCAGAAGGTACTTTAGGTAGGCAAGGTAGGACAGA 61053 C CU463841.14 78006 GACTCATCTTCACAGTGTACAAAAACATTACTTCATTATTGCCCCGCCCC 77957 |||| ||||||||||||||| |||||||||||| |||| ||| ||| CU302430.14 61054 GACTAATCTTCACAGTGTAC---AACATTACTTCAACATTGACCC-CCCA 61099 C CU463841.14 77956 TTTAGTCCTATAAACGGCTCT 77936 ||| |||||| || |||||| CU302430.14 61100 CTTAATCCTATGAAAGGCTCT 61120
Overview
- Query
- CU463841.14 - 79198 bps
- Hit
- CU302430.14 - 178441 bps
- Total alignments
- 21
- Best alignment
- alignment #1 (HSP: 1263 bps)
- Best alignment cartoon
Alternate alignments
| # | %ID | score | HSP | start | end | strand | hstart | hend | hstrand |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.23 | 928 | 1263 | 77936 | 79198 | -1 | 59857 | 61120 | 1 |
| 2 | 86.03 | 744 | 1239 | 10047 | 11285 | -1 | 10205 | 11457 | 1 |
| 3 | 85.95 | 737 | 1237 | 55253 | 56489 | -1 | 10205 | 11457 | 1 |
| 4 | 87.62 | 731 | 1155 | 40850 | 42004 | -1 | 10279 | 11457 | 1 |
| 5 | 75.35 | 854 | 2263 | 7083 | 9345 | -1 | 11603 | 13898 | 1 |
| 6 | 75.74 | 861 | 2319 | 37840 | 40158 | -1 | 11603 | 13898 | 1 |
| 7 | 81.65 | 768 | 1570 | 52184 | 53753 | -1 | 12221 | 13898 | 1 |
| 8 | 77.98 | 1017 | 2517 | 7147 | 9663 | -1 | 33142 | 35608 | 1 |
| 9 | 75.49 | 941 | 2657 | 37820 | 40476 | -1 | 33142 | 35691 | 1 |
| 10 | 81.75 | 735 | 1506 | 52248 | 53753 | -1 | 34097 | 35608 | 1 |
| 11 | 80.88 | 1583 | 2992 | 1390 | 4381 | -1 | 58828 | 61881 | 1 |
| 12 | 90.88 | 1666 | 2275 | 32734 | 35008 | -1 | 58828 | 61120 | 1 |
| 13 | 85.07 | 1829 | 3117 | 46320 | 49436 | -1 | 58828 | 61881 | 1 |
| 14 | 88.3 | 730 | 1113 | 24601 | 25713 | -1 | 63586 | 64688 | 1 |
| 15 | 88.3 | 730 | 1113 | 69805 | 70917 | -1 | 63586 | 64688 | 1 |
| 16 | 88.31 | 948 | 1423 | 10045 | 11467 | -1 | 89010 | 90429 | 1 |
| 17 | 88.38 | 946 | 1419 | 55251 | 56669 | -1 | 89010 | 90429 | 1 |
| 18 | 86.51 | 813 | 1312 | 40848 | 42159 | -1 | 89087 | 90429 | 1 |
| 19 | 79.74 | 1393 | 3161 | 6503 | 9663 | -1 | 90422 | 93690 | 1 |
| 20 | 80.98 | 1441 | 3217 | 37260 | 40476 | -1 | 90422 | 93690 | 1 |
| 21 | 78.83 | 1402 | 3275 | 51605 | 54879 | -1 | 90422 | 93690 | 1 |
