<=>End overlap alignment

Alignment #1 HSP: 273 bps / non-identical: 276 bps

Full alignment

CU457469.16	30405	GCACCTGCGGCATATGGAGGTTCCCAGGCTAGGGACTGAATCGGAGCTGT	30454
			   |  |  |    ||      | |||                       
CU041302.13	225005	AACCAGG-AGTTCCTGTCATGGCACAGTGGTTAACGAATCCGACTAGGAA	225053

CU457469.16	30455	AGCCTCTAGTCTACACCACAGCCACAGCAACGCCAGATCCGAGCCACATC	30504
			         |  |      | ||    |   ||    |  |      |||
CU041302.13	225054	CCATGAGGTTGCAGGTTCGATCCCTGCCCTTGCTCAGTGGGTTAACGATC	225103

CU457469.16	30505	TTCAGCCCACACCACAGCTCACCAAAGCTCCAAGAGTAACCATCCTGAAT	30554
			    |    ||  |    |     | |   ||       |     |    
CU041302.13	225104	CGGCGTTGCCATGAGCTGTGGTGTAGGTCACAGACACGGCTTGTATCCCG	225153

CU457469.16	30555	GCCCCCTTCCTCAGCCACCAGGCCATCTGGC---CTCTGAGCTTTTGCCC	30601
			           |         | |   ||||     | |  |   | |  
CU041302.13	225154	CGT------GGCTCTGGTGTAGGC---TGGCAGGTACAGCTCCGATTCGA	225194

CU457469.16	30602	AAGTTGTCTCCCGATATTCTTCCCTACACCCTCTGGGCTCCAGGCCCTGT	30651
			    |  |    ||   ||         |      ||| | ||     | 
CU041302.13	225195	CCCCTAGCCTGGGAACCTCCATATGCTGCGGGAGCGGCCCAAGAAATGGC	225244

CU457469.16	30652	GCTGGGCATCAGGGAAGCAGCCATGA	30677
			       |  |   ||  |   |  |
CU041302.13	225245	AAAAAAAAAAAAAAAAAAAAAAAAAA	225270

Overview

Query
CU457469.16 - 31414 bps
Hit
CU041302.13 - 226728 bps
Total alignments
22
Best alignment
alignment #1 (HSP: 273 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
186.46168273304053067712250052252701
279.7220149660456540-1419746891
389.11782663041130676146199464641
487.881652653041030674155513557761
587.321632673041130677-128046283131
675.621574163041130826-1424146871
784.531392603041130670-11936831939471
883.841352586047630412006532009181
988.0213421760466262-11679351681511
1084.81121237248182505411868101870461
1182.13120261238292408911868121870741
1286.181192172481825034-157368575841
1382.3511725960456303-128803290571
1481.711172593041330671173207734631
158411522660476272-191927921511
1682.98111237304403067611217121219461
1783.26108235248182505211327561329881
1883.871072172481825034-11679341681501
1984.11001953043330627114248144421
2078.95942523042430675-11542261544721
2178.88902543041130664116306165561
2281.958920760476253-11239991242031
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