<=>End overlap alignment

Alignment #1 HSP: 557 bps / non-identical: 587 bps

Full alignment

CU013524.5	147129	ATTTTTGTTTTTTCTTCCTCTTTCTTCTCTCCTTCTCAAACTCCAGCCGT	147178
			|||||| ||||| ||  ||||  |||||||||||||||||| | ||||||
CU012056.10	54581	ATTTTT-TTTTTGCTCACTCT--CTTCTCTCCTTCTCAAACCCTAGCCGT	54627

CU013524.5	147179	CACCCC-TTTCTTCTTCTTTTTCTTTTTGTCGGAGAGGTGATTTTGGGTC	147227
			| |||| |||||||||||| ||||| ||||| ||| |||||||| |||||
CU012056.10	54628	CGCCCCCTTTCTTCTTCTTCTTCTTCTTGTCAGAGGGGTGATTTAGGGTC	54677

CU013524.5	147228	AATTTTAACCCAAAAATCACCCCTCCGATTTGTTTTT-------------	147264
			|| ||| ||||||||||||||||||||||||||||||             
CU012056.10	54678	AACTTTGACCCAAAAATCACCCCTCCGATTTGTTTTTCCTTCTACCTTAA	54727

CU013524.5	147265	----------GATTTCACATTTTTT----TTTCTGT--TTTCTTTTTGTG	147298
			          |||||||||| ||||    ||||| |  ||| ||||||||
CU012056.10	54728	TTGAATAAGTGATTTCACATATTTTCTGTTTTCTTTCGTTTGTTTTTGTG	54777

CU013524.5	147299	ATATCGTCGTCTCTGAACGACTCTGTATGTTTTGATTTTCCGTCTTTGTG	147348
			|| ||||||||||| ||||||| ||| |||||||||||||||||||||||
CU012056.10	54778	ATTTCGTCGTCTCTAAACGACTTTGTTTGTTTTGATTTTCCGTCTTTGTG	54827

CU013524.5	147349	CGGTGCGTTTTTTATTTTCCGTCTTAGTGTGGTGTTTATTTGATTCATGT	147398
			||||| ||||||||||| ||||||||||| ||||||||||||||| | ||
CU012056.10	54828	CGGTGTGTTTTTTATTTCCCGTCTTAGTGCGGTGTTTATTTGATTTAGGT	54877

CU013524.5	147399	TGAAAGATTAGCTTTGAGCAAGTGCAGATCCGATCAATGACAATGACTTT	147448
			|||||||||| |||||| |||| ||||||||||||||||| |||||||||
CU012056.10	54878	TGAAAGATTAACTTTGAACAAGAGCAGATCCGATCAATGAAAATGACTTT	54927

CU013524.5	147449	GGCATCGTCACCGTTGCAGATCCGGAGACATGAGGATTCCGGAGACTTGA	147498
			||| |||||| |||||||||||||||||||||||||||||||||||||||
CU012056.10	54928	GGCGTCGTCAACGTTGCAGATCCGGAGACATGAGGATTCCGGAGACTTGA	54977

CU013524.5	147499	ATATAGTCATATTAGTCATATTTGTAGGCATAGGTACATTGCCGTTTTAT	147548
			|||||||||||||         ||||||||||||||| |||| |||||||
CU012056.10	54978	ATATAGTCATATT---------TGTAGGCATAGGTACCTTGCTGTTTTAT	55018

CU013524.5	147549	GTTATTAACATGGATGTTGTGAGTTTATTCATAGATTCATCCTTTTTGTT	147598
			| |||||||||||||| ||||||||| |||| |||||||| |||||||||
CU012056.10	55019	GCTATTAACATGGATGATGTGAGTTTGTTCACAGATTCATGCTTTTTGTT	55068

CU013524.5	147599	TTTAGCGAATTTGGATTTGTATTGTTTCGATGTACTCTATCAATTTGAAT	147648
			||||||||||||||| ||||||||| |||||||||| |||||||||||||
CU012056.10	55069	TTTAGCGAATTTGGAGTTGTATTGTATCGATGTACTTTATCAATTTGAAT	55118

CU013524.5	147649	GAATTAATATCGTTTATTTTTGTCAAAAAAAAAAAAA	147685
			|||| |||||| |||||||||||||||||||||||||
CU012056.10	55119	GAATGAATATCATTTATTTTTGTCAAAAAAAAAAAAA	55155

Overview

Query
CU013524.5 - 149422 bps
Hit
CU012056.10 - 109420 bps
Total alignments
11
Best alignment
alignment #1 (HSP: 557 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
185.21324557147129147685154581551551
272.8716955219952546-14109621
391.7920828376247906-1166219411
494.971151141156867096-1458559951
590.3126939047685157-1605764481
680.81650150327024204-1685483381
795.563945142082142126-150313503571
878.28351495764357791-157700578511
979.4851745736757540-157908581061
109269985736657463158964590631
1192.941381833156031742197347975301
Short-link