<=>End overlap alignment

Alignment #1 HSP: 2153 bps / non-identical: 2197 bps

Full alignment

CU184734.6	25541	TGTAACACCCCGTTTTCCCAACATACAAAATTTCTTTAAAAAAAACATAG	25590
			||||||||||||||||||||| || |||||||||||||||||   |||| 
CT030191.7	3788	TGTAACACCCCGTTTTCCCAATAT-CAAAATTTCTTTAAAAA---CATAA	3833

CU184734.6	25591	CATTTATCAGAGTAG-CATCATAAACAACGGGATATCACATATAACATAA	25639
			||||||||||||||  || ||  ||||||||||||||||||||||| |||
CT030191.7	3834	CATTTATCAGAGTAAACACCA--AACAACGGGATATCACATATAACGTAA	3881

CU184734.6	25640	TCCAAGACGGTTAAATAATGATTTAACATAATATCCTTAACATTGCAGCG	25689
			| | | || |||||||||| |||||||  |||||| | ||||||||||||
CT030191.7	3882	TTCCA-ACAGTTAAATAATAATTTAACC-AATATCTTAAACATTGCAGCG	3929

CU184734.6	25690	GAATTTAGTT--CGTAATCCATAAATCGGTTTTGGCACGCAGGCCTCAGC	25737
			|||  |  |   | |||| ||| || || |||||||||||||||| || |
CT030191.7	3930	GAAAGTCATAAACATAATTCATGAAACG-TTTTGGCACGCAGGCC-CAAC	3977

CU184734.6	25738	GTAAT-TCTTAAAAGAAATCAGTTCATAATCATAAAT-AGCATAAAAGT-	25784
			  | | ||| ||||||  | |  ||| || || |||| | ||||  ||| 
CT030191.7	3978	A-AGTATCTCAAAAGAGTTTA--TCAAAA-CAGAAATTATCATAGCAGTT	4023

CU184734.6	25785	CACGTAATAGAATGAAACATGCGTAATTCATAAAGCCCCATCCCGTTACG	25834
			||||||| |||||||| ||||  ||   ||| || |||||||||||||||
CT030191.7	4024	CACGTAAAAGAATGAAGCATGT-TATAGCATTAA-CCCCATCCCGTTACG	4071

CU184734.6	25835	TATCAGAGCGACCTAGAAGACACAGTGAAGGCAAGGCCACTCACGACGGA	25884
			||||||||||||||||||||||||||||||||||||||||||||||||| 
CT030191.7	4072	TATCAGAGCGACCTAGAAGACACAGTGAAGGCAAGGCCACTCACGACGGC	4121

CU184734.6	25885	AACAGCACTCTAAGCTCGGTCACCTGCACGTTACCCACG-GTCGAGGTAA	25933
			||| |||| |||||| || ||||||||| ||||||||   |  | || ||
CT030191.7	4122	AACTGCACACTAAGCACGATCACCTGCAAGTTACCCATACGAAG-GGCAA	4170

CU184734.6	25934	CATT--CAAACAGAAGGGGTGAGATTTCATAACAGATTAACATTAAACAA	25981
			||||  ||| |||||||||||||||||||||| | | ||||||||| || 
CT030191.7	4171	CATTTTCAAGCAGAAGGGGTGAGATTTCATAATAAAATAACATTAATCAG	4220

CU184734.6	25982	TGCAATTAAGAATCATAAGTTAACAACATGGTCATTTCATTAGTTAACTT	26031
			|| |||   ||||||||| |||||| |||  ||||| ||||| |||||||
CT030191.7	4221	TGTAATCGTGAATCATAAATTAACATCATAATCATTCCATTA-TTAACTT	4269

CU184734.6	26032	TGCATAATTGTTAAACTTTTAACACGTAATCGTATATCCATTAATTAGGG	26081
			||||||| || |||||  ||| ||| ||||| || ||||| | ||||   
CT030191.7	4270	TGCATAAATGCTAAACAGTTATCACATAATCATACATCCAATTATTATCA	4319

CU184734.6	26082	ATAACATAACATAATCAATAAGCACATATCACGTAATCACATATTCAATC	26131
			|  |||||||||||||||||| ||| |||||| ||||||| |||||| ||
CT030191.7	4320	ACGACATAACATAATCAATAAACACTTATCACTTAATCACGTATTCATTC	4369

CU184734.6	26132	ATTATCAACAAGGCATCTTAATCATGACAATGTGACAATGTTCCTAGACT	26181
			|||||||||||||||||||||||||||||||||||||||| || ||||||
CT030191.7	4370	ATTATCAACAAGGCATCTTAATCATGACAATGTGACAATGCTCTTAGACT	4419

CU184734.6	26182	CCGTATATGCATGTGGTACCAATCGTCATCATAAGTATTAATATACTTTA	26231
			|| |||||||||||||||||||||||||||||||||||||||||||||||
CT030191.7	4420	CCTTATATGCATGTGGTACCAATCGTCATCATAAGTATTAATATACTTTA	4469

CU184734.6	26232	ACCGTGCGGAGGACAAAGCTCCTATAAAACGTGCGGAGGACAAAGCTCCT	26281
			|  |||||||||||||||||||||||||||||||||||||||||||||||
CT030191.7	4470	ATTGTGCGGAGGACAAAGCTCCTATAAAACGTGCGGAGGACAAAGCTCCT	4519

CU184734.6	26282	AATTTTCGTGGTGAGGACAAAGCTCAATGTTATGCTATGCATGGACACAT	26331
			||| |||||||||||||| ||||||||||  |||||||||||||||||||
CT030191.7	4520	AATATTCGTGGTGAGGACTAAGCTCAATGAGATGCTATGCATGGACACAT	4569

CU184734.6	26332	ATGAACAAAACAACGTAATCGACTTATCAACATGCATCCAATAATTTGGA	26381
			||||||||||||  |||||  ||||||||| |||||||||||||||||||
CT030191.7	4570	ATGAACAAAACATTGTAATAAACTTATCAATATGCATCCAATAATTTGGA	4619

CU184734.6	26382	GCTAAACTTCATCATATACTTATGCACTTAGTTAAACAACGGAAGCAGCA	26431
			|||||||||||||||||||||||||||||||||||| |||| ||||||||
CT030191.7	4620	GCTAAACTTCATCATATACTTATGCACTTAGTTAAATAACGAAAGCAGCA	4669

CU184734.6	26432	TAAACAGATCACATAAACAAAATGATATCATTATATCAATAGCACATAAA	26481
			||||||| |||||||| ||| |||||||||||||||||||||||||||||
CT030191.7	4670	TAAACAGGTCACATAA-CAAGATGATATCATTATATCAATAGCACATAAA	4718

CU184734.6	26482	TTACATCATTATCAAGTTTTCATATCTTGCATGAATGTACAATACATTAG	26531
			||  ||||||||||| | |||||||||||||| |||||| | ||||||||
CT030191.7	4719	TTGTATCATTATCAATTCTTCATATCTTGCATAAATGTATATTACATTAG	4768

CU184734.6	26532	TTCATGTCCATTTAATATCAACATAACTTAAACAACTCTACAGGCTGCAT	26581
			 |||||| || ||||||| | ||| |||||||||||||||||| ||||||
CT030191.7	4769	CTCATGTTCAATTAATATTATCATGACTTAAACAACTCTACAGACTGCAT	4818

CU184734.6	26582	TAAACGTCTCCACTAGGTCTCAACACCAATTAGGGGTTCACTCTTGATCA	26631
			| |||| |  ||||||||||||  || | |||||||||||||||||||||
CT030191.7	4819	TTAACGACATCACTAGGTCTCATTACTAGTTAGGGGTTCACTCTTGATCA	4868

CU184734.6	26632	ACACATGCGACACAGATCGCACAAACACTCAAGCAACTACATTCTGGTTG	26681
			|||  ||||||||||||||||||| ||| ||| ||| | |||||||||||
CT030191.7	4869	ACAAGTGCGACACAGATCGCACAA-CACACAAACAAGTTCATTCTGGTTG	4917

CU184734.6	26682	TACTCGCGAGGCGAGAGTACTTACTCGCCATGGCGAGTAACACTAATCTC	26731
			||||||||||||||||||||||||||||||||||||||| |||| | |||
CT030191.7	4918	TACTCGCGAGGCGAGAGTACTTACTCGCCATGGCGAGTACCACTCAACTC	4967

CU184734.6	26732	CCAAACTGATGTTGTTCTGGGTTCAATCCTG-TCCTAAAATCATTCCTAA	26780
			||||| | | ||||||||||||||  || || ||||| | ||||||||||
CT030191.7	4968	CCAAATTAAGGTTGTTCTGGGTTCCCTC-TGATCCTACATTCATTCCTAA	5016

CU184734.6	26781	TCATCTCTAGGTATGTCTAGGCACTTAAAGGCACTCAAGGTCCAACTAAA	26830
			|||   ||||||||||  ||||||| ||||| ||||||||||||||||||
CT030191.7	5017	TCAATACTAGGTATGTTCAGGCACTCAAAGGTACTCAAGGTCCAACTAAA	5066

CU184734.6	26831	AAG-TCAAAAATACAAAATATGACATGCACTCTGCCTGAGCTCG------	26873
			||| || |||  || |||| | |||| |||||||||| ||||||      
CT030191.7	5067	AAGGTCGAAAC-ACGAAATCTAACATACACTCTGCCTTAGCTCGTTATGG	5115

CU184734.6	26874	CGAG----------------GCGAG---AAAGGG-TTGCTCGCCATGGCG	26903
			||||                |||||   || ||| |||||||||||||||
CT030191.7	5116	CGAGCTGCATCACACAACTCGCGAGGCGAAGGGGATTGCTCGCCATGGCG	5165

CU184734.6	26904	AGTTGGACCAAACAACTCGCGAGGCGAAGGAAAGGGGCTCGCGTGGCGAG	26953
			||||| |||||||||||||||||||||||| ||||| |||||||||||||
CT030191.7	5166	AGTTGAACCAAACAACTCGCGAGGCGAAGGGAAGGG-CTCGCGTGGCGAG	5214

CU184734.6	26954	CGATGAAGTCCATCACTCGCGAGGCGAGGTTCATCACTCGCTGTGGCGAG	27003
			||||||||| |||||||||||||||| || ||||| |||||   ||||||
CT030191.7	5215	CGATGAAGTTCATCACTCGCGAGGCGGGGATCATCCCTCGCCAAGGCGAG	5264

CU184734.6	27004	CGATGAACAGAAGCACGGGCAGACTAGGGTTTTTCTCAAAAATCCATCAC	27053
			|||||||||||||| |||||||||||||||||||||||||||||||||| 
CT030191.7	5265	CGATGAACAGAAGCTCGGGCAGACTAGGGTTTTTCTCAAAAATCCATCAT	5314

CU184734.6	27054	ACAACATGGTTCAAAGCCTAATTTTGATTCCAGAATTCATCCTAAACATA	27103
			 ||||||| |||||||| |  |||||||||||||||||||||||||||||
CT030191.7	5315	TCAACATGTTTCAAAGCTTGGTTTTGATTCCAGAATTCATCCTAAACATA	5364

CU184734.6	27104	TTCTAAGGTTGAAGGACGGTTTCTACATCAATCTAAACAAGTTTTACCGT	27153
			|||||||||| ||||||||||  | |||||||||||||||||||||||||
CT030191.7	5365	TTCTAAGGTTAAAGGACGGTTCTTTCATCAATCTAAACAAGTTTTACCGT	5414

CU184734.6	27154	TTGATCATCAATTTTTTAGGGTTTTAACCTAATTCCAAAACTTTTCTAAA	27203
			|||||||||||||||| |||||||| ||||||||||||||||||||||||
CT030191.7	5415	TTGATCATCAATTTTT-AGGGTTTTGACCTAATTCCAAAACTTTTCTAAA	5463

CU184734.6	27204	TCAATCCTAACTTTGTCAACTATTCATCAGAATTACAGAGGTTAATGCTA	27253
			||||||||||||||||||| || |||||||||||||||   | || | ||
CT030191.7	5464	TCAATCCTAACTTTGTCAATTAATCATCAGAATTACAGCAATCAACGTTA	5513

CU184734.6	27254	CTGAGTTATTAGTCCCACCCTTACCTGGTTATGAAGAAAATCGCAGCCCT	27303
			 ||| ||||||||| |||| |||||| ||| |||||||||||||||| ||
CT030191.7	5514	TTGAATTATTAGTCTCACCTTTACCTTGTT-TGAAGAAAATCGCAGCACT	5562

CU184734.6	27304	CTTGGTCTCTTGCTCCTCTCTAAGCTTTTTCTCCCTTTT---CCAAAA--	27348
			|||  |   || |||    ||  |||||| |||||||||   ||||||  
CT030191.7	5563	CTTCCTTGGTTTCTCTAGACTTGGCTTTT-CTCCCTTTTTCTCCAAAACA	5611

CU184734.6	27349	GTTTTCACGTACAATAAGTTTCTAAAATATTAGGTCTTCTCCTATTTATA	27398
			||  | |||||||||   |||||||||   |||||||   ||| | ||||
CT030191.7	5612	GTCGT-ACGTACAATGTTTTTCTAAAAC--TAGGTCTAA-CCTTTATATA	5657

CU184734.6	27399	TCTTTTTCTAATTACTTATTTTATCTCACTTTCTCCCCCAAAACTATCTA	27448
			 || ||  ||||||||||| ||||||||||||||||||||||||||||||
CT030191.7	5658	CCTCTTCTTAATTACTTATCTTATCTCACTTTCTCCCCCAAAACTATCTA	5707

CU184734.6	27449	AAATATCAAAACAACCCTCAACTAAATATTTTATATTATTTTCAAATCTT	27498
			||||||||||||| ||||||||||||||||||||||||||||||||||||
CT030191.7	5708	AAATATCAAAACAGCCCTCAACTAAATATTTTATATTATTTTCAAATCTT	5757

CU184734.6	27499	TATTTTATTTAACAATAAAATATATTCTCTAATC-TTATCAAATTCTCCA	27547
			|||||||||||||||||||||| ||||||  ||| |||||||||  ||||
CT030191.7	5758	TATTTTATTTAACAATAAAATA-ATTCTCATATCCTTATCAAATCTTCCA	5806

CU184734.6	27548	AAACTCATAACTTAACACGTCATCAATCAAATCATCAAAATCACCACAAA	27597
			|||||||||||||| ||||||||| ||||||||||||||| ||       
CT030191.7	5807	AAACTCATAACTTATCACGTCATCGATCAAATCATCAAAA-CA-------	5848

CU184734.6	27598	TCATCAAAATATATCAAAATCATGTATATATTATATAATTATAATATAAT	27647
			| | |         |||||||||| |||||||||||||||||||||||||
CT030191.7	5849	T-A-C---------CAAAATCATGCATATATTATATAATTATAATATAAT	5887

CU184734.6	27648	TGCCTAATCTCGATTAAATAA-CGATTAAACGAAAGTGGGCGTTACA	27693
			  ||||| ||||||||||||| |||||||||||||||||||||||||
CT030191.7	5888	CACCTAAACTCGATTAAATAAACGATTAAACGAAAGTGGGCGTTACA	5934

Overview

Query
CU184734.6 - 35799 bps
Hit
CT030191.7 - 107971 bps
Total alignments
2
Best alignment
alignment #1 (HSP: 2153 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
184.911005215325541276931378859341
284.81996215318869210211378859341
Short-link