<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 850 bps

Full alignment

CR974588.18	1	GGTCCCGAGGGGCTGGGTGGTGGGGACACCGTCACATAAACACCGCATCC	50
			|||||| ||||||||||||||||||||||| |||||||||||||||||||
CR956427.7	185802	GGTCCCTAGGGGCTGGGTGGTGGGGACACCATCACATAAACACCGCATCC	185851

CR974588.18	51	TGCAGGACGCCTGGGACAGCACCGAGGGCCACCAGGGGCAGCTGACGCTG	100
			|||||| ||||| |||||||||||||||||||||||||||||||||||||
CR956427.7	185852	TGCAGGGCGCCTAGGACAGCACCGAGGGCCACCAGGGGCAGCTGACGCTG	185901

CR974588.18	101	ATGGAGCCCTGGGGGTGGGGGGTGCCTGGTGGGCCTGGGAAGCCAGAGAA	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	185902	ATGGAGCCCTGGGGGTGGGGGGTGCCTGGTGGGCCTGGGAAGCCAGAGAA	185951

CR974588.18	151	GGGACCTCGGGGCAGCAGGGACTCAAGGGCAGACGCTCAGAGTCCTGAGG	200
			||||||||||||||||||||||||||||||||| ||||||||||||||||
CR956427.7	185952	GGGACCTCGGGGCAGCAGGGACTCAAGGGCAGATGCTCAGAGTCCTGAGG	186001

CR974588.18	201	GGGACAGTGACTGGCCCCGAGGTGCGGGAGCAAAGGGTGTCGGGAAAGGT	250
			||||||||||||||||||||||||| || |||||||||||||||||||||
CR956427.7	186002	GGGACAGTGACTGGCCCCGAGGTGCAGGGGCAAAGGGTGTCGGGAAAGGT	186051

CR974588.18	251	GGCCAGGTGACCGTTGGCTTGACCCCCCGACCCCCACCCCGAGCCAGGAG	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186052	GGCCAGGTGACCGTTGGCTTGACCCCCCGACCCCCACCCCGAGCCAGGAG	186101

CR974588.18	301	GGTGCCAGTCCCCCCAACCCCGGGCCCCGGGCTCACCGAAGATCCCAGGC	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186102	GGTGCCAGTCCCCCCAACCCCGGGCCCCGGGCTCACCGAAGATCCCAGGC	186151

CR974588.18	351	AGTTTGTTCGGGGGCGGCAGCTCGTTGCTTCTCTTCGGCGGCCTCCTCCT	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186152	AGTTTGTTCGGGGGCGGCAGCTCGTTGCTTCTCTTCGGCGGCCTCCTCCT	186201

CR974588.18	401	CAGGGGCCTCACCGCCCGAGGGGCACGGACAGGGCCTGGGCTCGCCCTGA	450
			|||||||||||||||||||||||||||||||||||| |||||||||||||
CR956427.7	186202	CAGGGGCCTCACCGCCCGAGGGGCACGGACAGGGCCCGGGCTCGCCCTGA	186251

CR974588.18	451	AAAAGGTGACCACGAAAGGCTGTTTGGAGCGCGGGGCCTGTCGCCCCAGC	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186252	AAAAGGTGACCACGAAAGGCTGTTTGGAGCGCGGGGCCTGTCGCCCCAGC	186301

CR974588.18	501	AGACCGGCCAGGCCAGGATCCACGCTGCGCCCTGAGACGGAGAGAGCAGA	550
			|||||||||||||||||||||||||||||||||||||| |||||||||||
CR956427.7	186302	AGACCGGCCAGGCCAGGATCCACGCTGCGCCCTGAGACAGAGAGAGCAGA	186351

CR974588.18	551	GAGGGTGGTCACTTGCGGGCAGGGACCTGCACGGGACACAGCGGGGACCC	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186352	GAGGGTGGTCACTTGCGGGCAGGGACCTGCACGGGACACAGCGGGGACCC	186401

CR974588.18	601	CCCTGTGGGCCGGCCGGGGGCAGGGAGGCTGAGGCTTCAGGGGACCCACT	650
			|||||||||| |||||||||||||||||||||||||||||||||||||||
CR956427.7	186402	CCCTGTGGGCTGGCCGGGGGCAGGGAGGCTGAGGCTTCAGGGGACCCACT	186451

CR974588.18	651	GTGCCTCAGTTTCCTCCTCTGAAGCCCCGAGTCCCACGTCCAGCCCCAGC	700
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186452	GTGCCTCAGTTTCCTCCTCTGAAGCCCCGAGTCCCACGTCCAGCCCCAGC	186501

CR974588.18	701	TCCCAGCGGGTCTGCAGGGGACAGGGGAGGGGCCTCTCGAGCCCAGGACT	750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186502	TCCCAGCGGGTCTGCAGGGGACAGGGGAGGGGCCTCTCGAGCCCAGGACT	186551

CR974588.18	751	GGGGGTTAATGATGGTCCTGGGCACTGCCAGTTGTGACAGCGCTTTGCAG	800
			|||||||||||||||||||||||||||||||||||||||| |||||||||
CR956427.7	186552	GGGGGTTAATGATGGTCCTGGGCACTGCCAGTTGTGACAGTGCTTTGCAG	186601

CR974588.18	801	CTTCCGGCCAGGTCACGTGGTGATCTCAGCCGGTCTTCACAGTGATGCCG	850
			||||||||||||||||||||||||||||||| ||||||| ||||||||||
CR956427.7	186602	CTTCCGGCCAGGTCACGTGGTGATCTCAGCCAGTCTTCATAGTGATGCCG	186651

CR974588.18	851	GAGCCCACACTTCACTGAGAAATGTCAGGGCCCCTCAGTGACGGCCCAGA	900
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	186652	GAGCCCACCCTTCACTGAGAAATGTCAGGGCCCCTCAGTGACGGCCCAGA	186701

CR974588.18	901	GCCTCGCTGCCAGGGACCCTCGGCACCAGGTCCCACGTCTCAGGGCTCCG	950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186702	GCCTCGCTGCCAGGGACCCTCGGCACCAGGTCCCACGTCTCAGGGCTCCG	186751

CR974588.18	951	AGGCCCAAGTTCCACCTTCCACCCCACACCTTCTGGGGAGCAGGGTGGGA	1000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186752	AGGCCCAAGTTCCACCTTCCACCCCACACCTTCTGGGGAGCAGGGTGGGA	186801

CR974588.18	1001	TTTACAACCCCCAGCCACCGGGGCACTGCCAGGGCTTCATGCTTGCTCTG	1050
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186802	TTTACAACCCCCAGCCACCGGGGCACTGCCAGGGCTTCATGCTTGCTCTG	186851

CR974588.18	1051	CTCAGCACCACCCGAGAGCAGGCCACTCACTGTCCCCTGATGCCCCCAAA	1100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186852	CTCAGCACCACCCGAGAGCAGGCCACTCACTGTCCCCTGATGCCCCCAAA	186901

CR974588.18	1101	GAGACTCCAGGCTCAGCGGGCAGAGACATTGGCCCCAAGTCCCTAACCTG	1150
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	186902	GAGACTCCGGGCTCAGCGGGCAGAGACATTGGCCCCAAGTCCCTAACCTG	186951

CR974588.18	1151	GATTCAACCACCGAGGTCTAATTCTGGAGTCCAAGTTCTTATCCATTTAA	1200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	186952	GATTCAACCACCGAGGTCTAATTCTGGAGTCCAAGTTCTTATCCATTTAA	187001

CR974588.18	1201	GTTCTTAACCACTGGGTTTGTGGTATAAAAGGGAAGAGAGAGAAAAGACT	1250
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187002	GTTCTTAACCACTGGGTTTGTGGTATAAAAGGGAAGAGAGAGAAAAGACT	187051

CR974588.18	1251	GTGGGCAGGGACATAACTGGGGCCTCAGCCGAGGAACAGTGATGCTTGTA	1300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187052	GTGGGCAGGGACATAACTGGGGCCTCAGCCGAGGAACAGTGATGCTTGTA	187101

CR974588.18	1301	AAAGTAGAATTTTATCCACAGCCACTTAAAGACTGAGGACGCAGGAAAAA	1350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187102	AAAGTAGAATTTTATCCACAGCCACTTAAAGACTGAGGACGCAGGAAAAA	187151

CR974588.18	1351	CACACTGATTATCCCTGGAAAAGTCCACACCATCAATGAAACTATCTTTG	1400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187152	CACACTGATTATCCCTGGAAAAGTCCACACCATCAATGAAACTATCTTTG	187201

CR974588.18	1401	TTTCTCTTTGTATTTCTAACAACCTCTTATTTTTTTCATTGTCAAAGCAG	1450
			|||||||||||||||||||||||||||| |||||||||||||||||||||
CR956427.7	187202	TTTCTCTTTGTATTTCTAACAACCTCTTGTTTTTTTCATTGTCAAAGCAG	187251

CR974588.18	1451	TATAACAACTCTAAAGAAACCTAGAAAAAAATCACCCATAAACTCCCTCC	1500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187252	TATAACAACTCTAAAGAAACCTAGAAAAAAATCACCCATAAACTCCCTCC	187301

CR974588.18	1501	CCACTCCACTTCATTTCCATTTTCTTGCATTTTTTCATATGTTAATATAA	1550
			||||||||||||||||||||||||||||||||||||||||| ||||||||
CR956427.7	187302	CCACTCCACTTCATTTCCATTTTCTTGCATTTTTTCATATGCTAATATAA	187351

CR974588.18	1551	GTTGTGAGCATAACAAAGAAGTTTTATCTTTTCTCAATTTTTTCACACAA	1600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187352	GTTGTGAGCATAACAAAGAAGTTTTATCTTTTCTCAATTTTTTCACACAA	187401

CR974588.18	1601	ACACTTTCTCAGTTGTTAAAGTGAGTCTCAACTATGAACATTTCTTTCTT	1650
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187402	ACACTTTCTCAGTTGTTAAAGTGAGTCTCAACTATGAACATTTCTTTCTT	187451

CR974588.18	1651	TTTTTTTTTCTTTTTTGGCCTCCTTGCGGCACGTGGCGTTCCCGGGCCAG	1700
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	187452	TTTTTTTT-CTTTTTTGGCCTCCTTGCGGCACGTGGCGTTCCCGGGCCAG	187500

CR974588.18	1701	GGGTCAGATCCGAGCAATAGTCTTGACCTAAGCTGAAAATGCAATAATTT	1750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187501	GGGTCAGATCCGAGCAATAGTCTTGACCTAAGCTGAAAATGCAATAATTT	187550

CR974588.18	1751	GAGATCCTTAATTCGCAGTGCTGGACTGGGGATTGAGCCTGAATCCTAGT	1800
			|||||||||||||||||||||||||||||||||||| |||||||||||||
CR956427.7	187551	GAGATCCTTAATTCGCAGTGCTGGACTGGGGATTGAACCTGAATCCTAGT	187600

CR974588.18	1801	GCTCCCAAGAAGCTGCCAATTCCAATACACCACAGTGGGAACTCCTTTTT	1850
			||||||||||||||||||||||||||||||||| ||||||||||||||||
CR956427.7	187601	GCTCCCAAGAAGCTGCCAATTCCAATACACCACCGTGGGAACTCCTTTTT	187650

CR974588.18	1851	TGTCTTTTAAGGCTTCACCTGTGGCATATGGAAGTTTCCAGACTAGAGGT	1900
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956427.7	187651	TGTCTTTTAAGGCTTCACCTGTGGCATATGGAAGTTTCCAGACTAGGGGT	187700

CR974588.18	1901	CAAATGGGAGCTGCAGCTGCCAGCCTAAGCCACAGTCACAGCAGCTAGGG	1950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187701	CAAATGGGAGCTGCAGCTGCCAGCCTAAGCCACAGTCACAGCAGCTAGGG	187750

CR974588.18	1951	ATCCAAGCCGTGTCTGTGACCCATGCTGAAGCTTGTGGCAACCCAGGATC	2000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956427.7	187751	ATCCAAGCCGTGTCTGTGACCCATGCTGAAGCTTGTGGCAACCCAGGATC	187800

Compact alignment

CR974588.18	1	GGTCCCGAGGGGCTGGGTGGTGGGGACACCGTCACATAAACACCGCATCC	50
			|||||| ||||||||||||||||||||||| |||||||||||||||||||
CR956427.7	185802	GGTCCCTAGGGGCTGGGTGGTGGGGACACCATCACATAAACACCGCATCC	185851

CR974588.18	51	TGCAGGACGCCTGGGACAGCACCGAGGGCCACCAGGGGCAGCTGACGCTG	100
			|||||| ||||| |||||||||||||||||||||||||||||||||||||
CR956427.7	185852	TGCAGGGCGCCTAGGACAGCACCGAGGGCCACCAGGGGCAGCTGACGCTG	185901

skip 50 bps 100% identity alignment

CR974588.18	151	GGGACCTCGGGGCAGCAGGGACTCAAGGGCAGACGCTCAGAGTCCTGAGG	200
			||||||||||||||||||||||||||||||||| ||||||||||||||||
CR956427.7	185952	GGGACCTCGGGGCAGCAGGGACTCAAGGGCAGATGCTCAGAGTCCTGAGG	186001

CR974588.18	201	GGGACAGTGACTGGCCCCGAGGTGCGGGAGCAAAGGGTGTCGGGAAAGGT	250
			||||||||||||||||||||||||| || |||||||||||||||||||||
CR956427.7	186002	GGGACAGTGACTGGCCCCGAGGTGCAGGGGCAAAGGGTGTCGGGAAAGGT	186051

skip 150 bps 100% identity alignment

CR974588.18	401	CAGGGGCCTCACCGCCCGAGGGGCACGGACAGGGCCTGGGCTCGCCCTGA	450
			|||||||||||||||||||||||||||||||||||| |||||||||||||
CR956427.7	186202	CAGGGGCCTCACCGCCCGAGGGGCACGGACAGGGCCCGGGCTCGCCCTGA	186251

skip 50 bps 100% identity alignment

CR974588.18	501	AGACCGGCCAGGCCAGGATCCACGCTGCGCCCTGAGACGGAGAGAGCAGA	550
			|||||||||||||||||||||||||||||||||||||| |||||||||||
CR956427.7	186302	AGACCGGCCAGGCCAGGATCCACGCTGCGCCCTGAGACAGAGAGAGCAGA	186351

skip 50 bps 100% identity alignment

CR974588.18	601	CCCTGTGGGCCGGCCGGGGGCAGGGAGGCTGAGGCTTCAGGGGACCCACT	650
			|||||||||| |||||||||||||||||||||||||||||||||||||||
CR956427.7	186402	CCCTGTGGGCTGGCCGGGGGCAGGGAGGCTGAGGCTTCAGGGGACCCACT	186451

skip 100 bps 100% identity alignment

CR974588.18	751	GGGGGTTAATGATGGTCCTGGGCACTGCCAGTTGTGACAGCGCTTTGCAG	800
			|||||||||||||||||||||||||||||||||||||||| |||||||||
CR956427.7	186552	GGGGGTTAATGATGGTCCTGGGCACTGCCAGTTGTGACAGTGCTTTGCAG	186601

CR974588.18	801	CTTCCGGCCAGGTCACGTGGTGATCTCAGCCGGTCTTCACAGTGATGCCG	850
			||||||||||||||||||||||||||||||| ||||||| ||||||||||
CR956427.7	186602	CTTCCGGCCAGGTCACGTGGTGATCTCAGCCAGTCTTCATAGTGATGCCG	186651

CR974588.18	851	GAGCCCACACTTCACTGAGAAATGTCAGGGCCCCTCAGTGACGGCCCAGA	900
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	186652	GAGCCCACCCTTCACTGAGAAATGTCAGGGCCCCTCAGTGACGGCCCAGA	186701

skip 200 bps 100% identity alignment

CR974588.18	1101	GAGACTCCAGGCTCAGCGGGCAGAGACATTGGCCCCAAGTCCCTAACCTG	1150
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	186902	GAGACTCCGGGCTCAGCGGGCAGAGACATTGGCCCCAAGTCCCTAACCTG	186951

skip 250 bps 100% identity alignment

CR974588.18	1401	TTTCTCTTTGTATTTCTAACAACCTCTTATTTTTTTCATTGTCAAAGCAG	1450
			|||||||||||||||||||||||||||| |||||||||||||||||||||
CR956427.7	187202	TTTCTCTTTGTATTTCTAACAACCTCTTGTTTTTTTCATTGTCAAAGCAG	187251

skip 50 bps 100% identity alignment

CR974588.18	1501	CCACTCCACTTCATTTCCATTTTCTTGCATTTTTTCATATGTTAATATAA	1550
			||||||||||||||||||||||||||||||||||||||||| ||||||||
CR956427.7	187302	CCACTCCACTTCATTTCCATTTTCTTGCATTTTTTCATATGCTAATATAA	187351

skip 100 bps 100% identity alignment

CR974588.18	1651	TTTTTTTTTCTTTTTTGGCCTCCTTGCGGCACGTGGCGTTCCCGGGCCAG	1700
			|||||||| |||||||||||||||||||||||||||||||||||||||||
CR956427.7	187452	TTTTTTTT-CTTTTTTGGCCTCCTTGCGGCACGTGGCGTTCCCGGGCCAG	187500

skip 50 bps 100% identity alignment

CR974588.18	1751	GAGATCCTTAATTCGCAGTGCTGGACTGGGGATTGAGCCTGAATCCTAGT	1800
			|||||||||||||||||||||||||||||||||||| |||||||||||||
CR956427.7	187551	GAGATCCTTAATTCGCAGTGCTGGACTGGGGATTGAACCTGAATCCTAGT	187600

CR974588.18	1801	GCTCCCAAGAAGCTGCCAATTCCAATACACCACAGTGGGAACTCCTTTTT	1850
			||||||||||||||||||||||||||||||||| ||||||||||||||||
CR956427.7	187601	GCTCCCAAGAAGCTGCCAATTCCAATACACCACCGTGGGAACTCCTTTTT	187650

CR974588.18	1851	TGTCTTTTAAGGCTTCACCTGTGGCATATGGAAGTTTCCAGACTAGAGGT	1900
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956427.7	187651	TGTCTTTTAAGGCTTCACCTGTGGCATATGGAAGTTTCCAGACTAGGGGT	187700

skip 100 bps 100% identity alignment

Overview

Query
CR974588.18 - 86219 bps
Hit
CR956427.7 - 187800 bps
Total alignments
28
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
198.95192120001200011858021878001
289.961792603805038309113321135791
392.71992607743077689113321135801
489.471812666485265117-115963162281
589.51852766815968434116864171391
690.251922777741977695116864171401
791.511782476815968405-136955372011
891.51812477741977665-136955372011
991.161892616815868418147394476531
1092.72012617741877678147394476531
1192.591862433803938281147395476371
1288.851862907741877707-179425797111
1390.771922693803938307-11031681034381
1490.841892637742877690-11031681034291
1590.841792526815968410-11031881034381
1690.68198280380383831711069561072341
1791.1203282681596844011069571072371
1892.5214281774197769911069571072361
1993.86236296380353833011103611106531
2090.94199288681596844611103651106511
2191.37201281774197769911103651106421
2291.58207284681586844111423231426071
2391.85209282774187769911423231426041
2493.71228289380393832711423241426091
2588.031802857741877702-11528801531631
2692.55193255681586841211549111551651
2793.33202255774187767211549111551651
2893.85193243380393828111549121551551
Short-link