<=>End overlap alignment

Alignment #1 HSP: 1999 bps / non-identical: 650 bps

Full alignment

CR956393.14	1	GATCCAACTCTAAAAAATCATTCAAAGTCCAGGAAGATGCCCAGACATAT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5496	GATCCAACTCTAAAAAATCATTCAAAGTCCAGGAAGATGCCCAGACATAT	5545

CR956393.14	51	AAAACCTCCCAGCCTACATTAAAAAAAAAAAAAA--TTACACTGCAACTG	98
			||||||||||||||||||||||||||||||||||  ||||||||||||||
CR956390.11	5546	AAAACCTCCCAGCCTACATTAAAAAAAAAAAAAAAATTACACTGCAACTG	5595

CR956393.14	99	GTAAAGCTCATGAGTCATATCTGATTACATTTCAGATTCAACTTGGATCT	148
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5596	GTAAAGCTCATGAGTCATATCTGATTACATTTCAGATTCAACTTGGATCT	5645

CR956393.14	149	GTAGTTATATAATATGTTAGCACCTGGGAAGCCCTGGCTCAATGGCAGGT	198
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5646	GTAGTTATATAATATGTTAGCACCTGGGAAGCCCTGGCTCAATGGCAGGT	5695

CR956393.14	199	CCATGATATGGGCCCAGACACGTTAGTTTCTGTTGCCTACATGAAGGGGA	248
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5696	CCATGATATGGGCCCAGACACGTTAGTTTCTGTTGCCTACATGAAGGGGA	5745

CR956393.14	249	TCTGAATGTCCAGTCCAAACCAAGAGCTTCTACTTGTAAGAATCTTCTGG	298
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5746	TCTGAATGTCCAGTCCAAACCAAGAGCTTCTACTTGTAAGAATCTTCTGG	5795

CR956393.14	299	GAGGCTTCTCATCAGGGCAGTCTCTCTGGCCCTACTCTGAGACGATAGTT	348
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5796	GAGGCTTCTCATCAGGGCAGTCTCTCTGGCCCTACTCTGAGACGATAGTT	5845

CR956393.14	349	CTGCTCTGAACTGGGAATTTGTTTATTAAACAGCACCTGGGCGACTCTGA	398
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5846	CTGCTCTGAACTGGGAATTTGTTTATTAAACAGCACCTGGGCGACTCTGA	5895

CR956393.14	399	AGCAGAGGCTGCATTGACTTTGTAGATGGTGGAGCAGCACATCCACCAAA	448
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5896	AGCAGAGGCTGCATTGACTTTGTAGATGGTGGAGCAGCACATCCACCAAA	5945

CR956393.14	449	GGTTCACGTGCAGTCAGGTGGATTCGCCCTTTGGTTGAAAACAGAGCCTT	498
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5946	GGTTCACGTGCAGTCAGGTGGATTCGCCCTTTGGTTGAAAACAGAGCCTT	5995

CR956393.14	499	TAGAACCAGCTTCATCTGCTGCTGGCCTTACAACCATGGGAGAAAGTACA	548
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	5996	TAGAACCAGCTTCATCTGCTGCTGGCCTTACAACCATGGGAGAAAGTACA	6045

CR956393.14	549	GACTTCTGCCCGGAAAATCACAGTCATAAAAACAATGCCCCATCTGTAGT	598
			|||||| ||||||||||||||||||||||||| |||||||||||||||||
CR956390.11	6046	GACTTCCGCCCGGAAAATCACAGTCATAAAAATAATGCCCCATCTGTAGT	6095

CR956393.14	599	CCATGGTGGGGCTTGAACAAGGAAACATAGCAGGGTGCTTAGCACAGTGT	648
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6096	CCATGGTGGGGCTTGAACAAGGAAACATAGCAGGGTGCTTAGCACAGTGT	6145

CR956393.14	649	CAGGCACACAGGCAGTGCTCAATTAAAGGTATTGACTATTATCATTAACT	698
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6146	CAGGCACACAGGCAGTGCTCAATTAAAGGTATTGACTATTATCATTAACT	6195

CR956393.14	699	TATGGCATCTATTCATGACTAGAGGTGAGGGTGTGTGGTGGGGCCCTGGA	748
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6196	TATGGCATCTATTCATGACTAGAGGTGAGGGTGTGTGGTGGGGCCCTGGA	6245

CR956393.14	749	CCAAGACGCACAGCTGGCCACAGCTTAACCTCACGGACCTGATAGAGGAG	798
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6246	CCAAGACGCACAGCTGGCCACAGCTTAACCTCACGGACCTGATAGAGGAG	6295

CR956393.14	799	AGGGCAGCGTGCCCAAGTGTGAGACAGACTCAAGGGCTAGAGAACCCAGT	848
			||||||||||||||||||||||||||||||||||||||||||||||||| 
CR956390.11	6296	AGGGCAGCGTGCCCAAGTGTGAGACAGACTCAAGGGCTAGAGAACCCAGC	6345

CR956393.14	849	GCAGAGACAATAACGGAAGACAAGTTTTGGGGGCAAGCCATCGCCAAGGG	898
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6346	GCAGAGACAATAACGGAAGACAAGTTTTGGGGGCAAGCCATCGCCAAGGG	6395

CR956393.14	899	AGGAACACCTGGGTTCTAGAGTGATGAGGCCGAAGTGAGTTAATCTGCAG	948
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6396	AGGAACACCTGGGTTCTAGAGTGATGAGGCCGAAGTGAGTTAATCTGCAG	6445

CR956393.14	949	TCATTCTCCCTGGCTGAAGCTCCCACGTGAGGCTAAGACACCCAGCATGT	998
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6446	TCATTCTCCCTGGCTGAAGCTCCCACGTGAGGCTAAGACACCCAGCATGT	6495

CR956393.14	999	TGTGAGCTTCCTGCAAAGGATGGGCAAAGAGTTTCGTTTTCTCTTTATTT	1048
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6496	TGTGAGCTTCCTGCAAAGGATGGGCAAAGAGTTTCGTTTTCTCTTTATTT	6545

CR956393.14	1049	CTCTTTTTCTCCTGAAAACTTTTGTTGATGTTATTACTTATGGAAAACTT	1098
			|||||||||||||||||| ||||||||||||| |||||||||||||||||
CR956390.11	6546	CTCTTTTTCTCCTGAAAATTTTTGTTGATGTTGTTACTTATGGAAAACTT	6595

CR956393.14	1099	TTTTTCGTTTTTTAAAGTTTTGTTGCAGTGTAGTTGATTTACAATATTGT	1148
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956390.11	6596	TTTTTCGTTTTTTAAAGTTTTGTTGCAGTGTAGTTGATTTACAATACTGT	6645

CR956393.14	1149	GAAGATTTCTGCTGTACAACAAAGTGATTCAGCTCCACGTGTAGTTTTCT	1198
			| |||||||||||||||||||||||||||| | |||||||||||||||||
CR956390.11	6646	GCAGATTTCTGCTGTACAACAAAGTGATTCGGTTCCACGTGTAGTTTTCT	6695

CR956393.14	1199	TTCTTTTCTTTTCTTTTATTTCCCTTTCTTTCTTTCCCATTGTCTTAATC	1248
			|||||| |||||||||||||||||||||||||||||||||| ||||||||
CR956390.11	6696	TTCTTT-CTTTTCTTTTATTTCCCTTTCTTTCTTTCCCATTCTCTTAATC	6744

CR956393.14	1249	ATTGGGTCTTATTCAGACTATCTGCAAGACACATTTAGCAGCAATAGATT	1298
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6745	ATTGGGTCTTATTCAGACTATCTGCAAGACACATTTAGCAGCAATAGATT	6794

CR956393.14	1299	TTCCCACTTGAAAATCGTACAGAACGTCAAGAACGGGTGGCCAGCAACAG	1348
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6795	TTCCCACTTGAAAATCGTACAGAACGTCAAGAACGGGTGGCCAGCAACAG	6844

CR956393.14	1349	TCATCACAGCAACAGAGGAACCAGAAAGCCACGTACGGATGGCAGAAAAA	1398
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6845	TCATCACAGCAACAGAGGAACCAGAAAGCCACGTACGGATGGCAGAAAAA	6894

CR956393.14	1399	TACCTGAGCCAGACAGAGGTATCTTAAGGAGCTGGTAGTCCAACTAGTTA	1448
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6895	TACCTGAGCCAGACAGAGGTATCTTAAGGAGCTGGTAGTCCAACTAGTTA	6944

CR956393.14	1449	TTTGGCATTATTATTATTTAATGTCTGGAGGGTCCTAGACATTTTTAATT	1498
			||||||||||||||||||||||||||||||||||||||||||||| ||||
CR956390.11	6945	TTTGGCATTATTATTATTTAATGTCTGGAGGGTCCTAGACATTTTAAATT	6994

CR956393.14	1499	TTCCTGACTTTAACTGTGTGTATTGGAGTTCCTGCTGTGGCTCCATGGGT	1548
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	6995	TTCCTGACTTTAACTGTGTGTATTGGAGTTCCTGCTGTGGCTCCATGGGT	7044

CR956393.14	1549	TAAGAACCTGACATATTATCCATGAGGATTCAGGTTCAATCCCTGGCCTT	1598
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	7045	TAAGAACCTGACATATTATCCATGAGGATTCAGGTTCAATCCCTGGCCTT	7094

CR956393.14	1599	TCTCAGCAGGTTAAGGATCTCATGTTGCTGCAAGCTGCAGTATCAGTGGG	1648
			||||||||||||||||||||| |||||||||||||||| |||||||||||
CR956390.11	7095	TCTCAGCAGGTTAAGGATCTCGTGTTGCTGCAAGCTGCGGTATCAGTGGG	7144

CR956393.14	1649	CTTGGATCCAGCTTTGCTGTGGCTGTGGCGGAGGTCGCAGCTGCAGCTCC	1698
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	7145	CTTGGATCCAGCTTTGCTGTGGCTGTGGCGGAGGTCGCAGCTGCAGCTCC	7194

CR956393.14	1699	AATTCAACCCCTAGCCTGTGGAACTTCCACATGCCACAGGTGTGGCCATA	1748
			||||||||||||||||||||||||||||||||||| ||||||||||||||
CR956390.11	7195	AATTCAACCCCTAGCCTGTGGAACTTCCACATGCCGCAGGTGTGGCCATA	7244

CR956393.14	1749	AAAAGAAAACATACAAACAAAAACAGTGTGCATCTTGAGGGGAGAGAGAG	1798
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	7245	AAAAGAAAACATACAAACAAAAACAGTGTGCATCTTGAGGGGAGAGAGAG	7294

CR956393.14	1799	AAATAGCTTCAGTCCACAAGGGAACCCTCCTCTCCACTGCCCTCTGTGCC	1848
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR956390.11	7295	AAATAGCTTCAGTCCACAAGGGAACCCTCCTCTCCACTGCCCTCTGTGCC	7344

CR956393.14	1849	CCCTGCCCGGGTGAGTGTGCAACGGGAGGCGGGAATCCGCAGAGACCCCT	1898
			||||||||||||||||||||||||||||| ||||||| ||||||||||||
CR956390.11	7345	CCCTGCCCGGGTGAGTGTGCAACGGGAGGTGGGAATCTGCAGAGACCCCT	7394

CR956393.14	1899	GATAGGCTCAGTGCTTGCTGCCTCTCTCGTATGAGCATCCTGTGCAGTGG	1948
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956390.11	7395	GATAGGCTCAGTGCTTGCTGCCTCTCTCGTATGAGCATCCTGTGCAATGG	7444

CR956393.14	1949	CGTGTGACGCTAGTGTTTAAAGAGCAGTATTTTCCTACCACATGGCCACT	1998
			||||||||||||||||||||| ||||||||||||||||||||||||||||
CR956390.11	7445	CGTGTGACGCTAGTGTTTAAACAGCAGTATTTTCCTACCACATGGCCACT	7494

CR956393.14	1999	A	1999
			|
CR956390.11	7495	A	7495

Compact alignment

skip 50 bps 100% identity alignment

CR956393.14	51	AAAACCTCCCAGCCTACATTAAAAAAAAAAAAAA--TTACACTGCAACTG	98
			||||||||||||||||||||||||||||||||||  ||||||||||||||
CR956390.11	5546	AAAACCTCCCAGCCTACATTAAAAAAAAAAAAAAAATTACACTGCAACTG	5595

skip 450 bps 100% identity alignment

CR956393.14	549	GACTTCTGCCCGGAAAATCACAGTCATAAAAACAATGCCCCATCTGTAGT	598
			|||||| ||||||||||||||||||||||||| |||||||||||||||||
CR956390.11	6046	GACTTCCGCCCGGAAAATCACAGTCATAAAAATAATGCCCCATCTGTAGT	6095

skip 200 bps 100% identity alignment

CR956393.14	799	AGGGCAGCGTGCCCAAGTGTGAGACAGACTCAAGGGCTAGAGAACCCAGT	848
			||||||||||||||||||||||||||||||||||||||||||||||||| 
CR956390.11	6296	AGGGCAGCGTGCCCAAGTGTGAGACAGACTCAAGGGCTAGAGAACCCAGC	6345

skip 200 bps 100% identity alignment

CR956393.14	1049	CTCTTTTTCTCCTGAAAACTTTTGTTGATGTTATTACTTATGGAAAACTT	1098
			|||||||||||||||||| ||||||||||||| |||||||||||||||||
CR956390.11	6546	CTCTTTTTCTCCTGAAAATTTTTGTTGATGTTGTTACTTATGGAAAACTT	6595

CR956393.14	1099	TTTTTCGTTTTTTAAAGTTTTGTTGCAGTGTAGTTGATTTACAATATTGT	1148
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956390.11	6596	TTTTTCGTTTTTTAAAGTTTTGTTGCAGTGTAGTTGATTTACAATACTGT	6645

CR956393.14	1149	GAAGATTTCTGCTGTACAACAAAGTGATTCAGCTCCACGTGTAGTTTTCT	1198
			| |||||||||||||||||||||||||||| | |||||||||||||||||
CR956390.11	6646	GCAGATTTCTGCTGTACAACAAAGTGATTCGGTTCCACGTGTAGTTTTCT	6695

CR956393.14	1199	TTCTTTTCTTTTCTTTTATTTCCCTTTCTTTCTTTCCCATTGTCTTAATC	1248
			|||||| |||||||||||||||||||||||||||||||||| ||||||||
CR956390.11	6696	TTCTTT-CTTTTCTTTTATTTCCCTTTCTTTCTTTCCCATTCTCTTAATC	6744

skip 200 bps 100% identity alignment

CR956393.14	1449	TTTGGCATTATTATTATTTAATGTCTGGAGGGTCCTAGACATTTTTAATT	1498
			||||||||||||||||||||||||||||||||||||||||||||| ||||
CR956390.11	6945	TTTGGCATTATTATTATTTAATGTCTGGAGGGTCCTAGACATTTTAAATT	6994

skip 100 bps 100% identity alignment

CR956393.14	1599	TCTCAGCAGGTTAAGGATCTCATGTTGCTGCAAGCTGCAGTATCAGTGGG	1648
			||||||||||||||||||||| |||||||||||||||| |||||||||||
CR956390.11	7095	TCTCAGCAGGTTAAGGATCTCGTGTTGCTGCAAGCTGCGGTATCAGTGGG	7144

skip 50 bps 100% identity alignment

CR956393.14	1699	AATTCAACCCCTAGCCTGTGGAACTTCCACATGCCACAGGTGTGGCCATA	1748
			||||||||||||||||||||||||||||||||||| ||||||||||||||
CR956390.11	7195	AATTCAACCCCTAGCCTGTGGAACTTCCACATGCCGCAGGTGTGGCCATA	7244

skip 100 bps 100% identity alignment

CR956393.14	1849	CCCTGCCCGGGTGAGTGTGCAACGGGAGGCGGGAATCCGCAGAGACCCCT	1898
			||||||||||||||||||||||||||||| ||||||| ||||||||||||
CR956390.11	7345	CCCTGCCCGGGTGAGTGTGCAACGGGAGGTGGGAATCTGCAGAGACCCCT	7394

CR956393.14	1899	GATAGGCTCAGTGCTTGCTGCCTCTCTCGTATGAGCATCCTGTGCAGTGG	1948
			|||||||||||||||||||||||||||||||||||||||||||||| |||
CR956390.11	7395	GATAGGCTCAGTGCTTGCTGCCTCTCTCGTATGAGCATCCTGTGCAATGG	7444

CR956393.14	1949	CGTGTGACGCTAGTGTTTAAAGAGCAGTATTTTCCTACCACATGGCCACT	1998
			||||||||||||||||||||| ||||||||||||||||||||||||||||
CR956390.11	7445	CGTGTGACGCTAGTGTTTAAACAGCAGTATTTTCCTACCACATGGCCACT	7494

skip 1 bps 100% identity alignment

Overview

Query
CR956393.14 - 195684 bps
Hit
CR956390.11 - 7495 bps
Total alignments
4
Best alignment
alignment #1 (HSP: 1999 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
198.9519291999119991549674951
295.8964739816898240116881
381.18691706060060769-1134915181
476.145222660552607771701972361
Short-link