<=>End overlap alignment

Alignment #1 HSP: 61 bps / non-identical: 50 bps

Full alignment

C  CR956398.4	116290	TGTGGCATAGGCTGGCAGCTGCAGCTCCAATTTGACACCTAGGCTAGGAA	116241
			||||| ||||| ||| ||||| |||||| ||| ||| ||| | || ||||
  CR956364.13	900	TGTGGTATAGGATGGAAGCTGTAGCTCCCATTCGACCCCTGGCCTGGGAA	949

C  CR956398.4	116240	CTTCCATATGC	116230
			|||||||||||
  CR956364.13	950	CTTCCATATGC	960

Compact alignment

C  CR956398.4	116290	TGTGGCATAGGCTGGCAGCTGCAGCTCCAATTTGACACCTAGGCTAGGAA	116241
			||||| ||||| ||| ||||| |||||| ||| ||| ||| | || ||||
  CR956364.13	900	TGTGGTATAGGATGGAAGCTGTAGCTCCCATTCGACCCCTGGCCTGGGAA	949

skip 11 bps 100% identity alignment

Overview

Query
CR956398.4 - 137365 bps
Hit
CR956364.13 - 105198 bps
Total alignments
31
Best alignment
alignment #1 (HSP: 61 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
183.613161116230116290-19009601
292.53181241181120511110013401
388.1819628259766257-1110013951
4931872431343013672-1110013421
585.3818728517952079126362266621
692.151832451343013674-126376266171
790.3219728159776257-126378266561
890.1119628217952076131177314591
989.891822661006010325-131193314591
1091.911812461342713672-131193314391
1189.3618828459776260139223395041
1289.8918326818102077-139236395021
1390.571852638867288934-180702809661
1490.7119326918102078-187433877011
1592.6518724560156259187847880911
1691.051862571343013686187847881031
1792.5618324218102051-187849880901
1889.7419127618042079-190544908161
1990.311802568868088935190553908101
2091.351962631342813690190565908301
2191.420627118102080-192581928591
2292.8521827659856260192582928611
2388.818227337454017-192582928581
2488.761822694357943847192584928591
2590.041892638867288934192588928581
2694.241952431343013672192616928581
2793.831922431343013672-192948931901
2892.181802438869288934-192948931901
2992.732122745984625711027191029931
3091.1119426918112079-11027241029931
3189.96184268134051367211027251029931
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